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bioinfo-hcpa / biovars

Tool for joining all the bioinfo-hcpa's variant information retrieval APIs.
GNU General Public License v3.0
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rpy2 installation doesn't work for some Linux systems #3

Closed colombelli closed 3 months ago

colombelli commented 5 months ago

Description

A user reported having issues with rpy2 installation "in Linux systems". No further details have been reported, so we need to investigate what is going on, reinstall it on our own Linux systems, and identify if there are any issues for us as well.

Trying out different Pyhton versions might also be a good idea, although this is just a nice to have currently, since we don't have any more information from the user, like specs and all.

To Reproduce

No information provided.

Expected behavior

The installation should be smooth, without errors.

Priority

High. This bug prevents the proper installation of BIOVARS, as well as its plotting functionalities.

Additional details

None provided.

colombelli commented 3 months ago

This bug depends a lot on the user's utilized system. It's difficult to debug and try to solve it without further details. A docker image will be provided (https://github.com/bioinfo-hcpa/biovars/issues/4) so users with rpy2 installation problems can just Docker it out.