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bioinfo-ibms-pumc / SCSA

SCSA: cell type annotation for single-cell RNA-seq data
GNU General Public License v3.0
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Support FindConservedMarkers() as input from Seurat #12

Open spadavec opened 3 years ago

spadavec commented 3 years ago

Hello!

Thank you for the work on this great resource! I would like to request that the output from FindConservedMarkers() in Seurat be supported as an input for this script as well. I think it can be cobbled together currently by editing it by hand to match column headers.

bioinfo-ibms-pumc commented 3 years ago

Thanks for your suggestion. I'll consider it in the future. However, to solve your question, you could just reform a similar headline like the "FindAllMarker" function in seurat, which could be performed easily in R. Thanks a lot.