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bioinfo-ibms-pumc / SCSA

SCSA: cell type annotation for single-cell RNA-seq data
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Gene num in GO #16

Closed jon-xu closed 3 years ago

jon-xu commented 3 years ago

Hi, would you please explain how the genes are selected in GO analysis, please? In the seurat FindAllMarker output, I see more significant DEG for a cluster than the genes used in SCSA for GO analysis (according to the "Gene Num" used for that cluster in the output...

Also, are both positively and negatively DEG used for that?

Thanks!

jon-xu commented 3 years ago

Sorry Just saw you filtered it with logFC > 1, p < 0.05.