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bioinfo-ibms-pumc / SCSA

SCSA: cell type annotation for single-cell RNA-seq data
GNU General Public License v3.0
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accept scanpy output #2

Open Gibbsdavidl opened 4 years ago

Gibbsdavidl commented 4 years ago

scanpy is a popular python package for scRNA-seq analysis and processing. It would be great to accept anndata objects.

https://icb-scanpy.readthedocs-hosted.com/en/stable/

bioinfo-ibms-pumc commented 4 years ago

Thanks for the suggestion. I will test and add the function to accept anndata objects in the next modified version.

bioinfo-ibms-pumc commented 4 years ago

I just added the function for scanpy and uploaded a test file, please see ReadMe file for detail. Thanks for the suggestion again.