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bioinfo-ibms-pumc / SCSA

SCSA: cell type annotation for single-cell RNA-seq data
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No Z scores given for a particular cluster #21

Open matt-sd-watson opened 2 years ago

matt-sd-watson commented 2 years ago

Hello,

I am running SCSA for a single cell sample that is enriched with hematopoietic stem cells. The largest cluster when annotated with SCSA gives the following 3 annotation possibilities:

Cycling basal cell
Late activated neural stem cell Mesenchymal progenitor cell

However, there are no Z scores associated with these annotations. This is the only cluster (of 6) where no scores are provided.

In what situations would SCSA fail to provide Z scores, but still suggest a cell type? Thanks!

bioinfo-ibms-pumc commented 1 year ago

Only one cell type was given which was not able to execute the z-score conversion.