Issue in creating config.yml file for vep annotated vcf file

bioinfo-pf-curie / TMB

Tumor Mutational Burden

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Issue in creating config.yml file for vep annotated vcf file #22

Open Raghu9721 opened 9 months ago

Raghu9721 commented 9 months ago

Hello @apeltzer @FriederikeHanssen

This is Raghavendra, I am currently using pyTMB.py for finding Tumor mutational burden with having VEP annotated vcf output file. But I am unable to use pyTMB.py due to non-availability of specific config.yml file for VEP. Please help me in creating it.

nservant commented 7 months ago

Hi @Raghu9721 In theory, building this file is not so complicated. Could you share with me an example of VCF file annotated with VEP please ?

nservant commented 7 months ago

@Raghu9721 , can you look at the config in #20