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bioinfo-ut / GenomeTester4

A toolkit for performing set operations - union, intersection and complement - on k-mer lists.
GNU General Public License v3.0
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Cannot stat file Block 0 error? #19

Closed milw closed 1 year ago

milw commented 3 years ago

Running the binary directly downloaded from the repository, and it does seem to generate an index- but there is a stat error for both of the blocks of input data...

/media/software/genometester4/4.0.0/bin/glistmaker /media/prod-data/genome-indexes/Wheat-IWGSC/chrTriticum_aestivum.IWGSC.dna.toplevel.fa -w 11 -o triticicum_aestivum_IWGSC1
maker_queue_add_file: File /media/prod-data/genome-indexes/Wheat-IWGSC/chrTriticum_aestivum.IWGSC.dna.toplevel.fa as 2 blocks
  Block 0 from 0 to 7755892916
Cannot stat file Block 0
  Block 1 from 7755892916 to 14789717255
Cannot stat file Block 1
bioinfo-ut commented 3 years ago

Thanks for the information. I believe the index will be functional despite the error codes. You can also try a newer version of the GenomeTester4, version 4.1 is downloadable here: https://github.com/bioinfo-ut/GenomeTester4/tree/4_1_unstable