Hi,
It seems I have a similar issue than other users but I fail to find out what is going wrong
I installed PhenotypeSeeker and the example files run succesfully. I then moved to a real dataset, I tried it out with fastq files, transformed them into fasta, had the files in different direcotries and in the same and used absolute and relativ pathes in the data.pheno file,
no matter what I do running
phenotypeseeker modeling data.pheno
I get
"Error: Could not make wordmap from file K-mer_lists,"
and then followed by the sample name
the K-mer lists directory gets cretaed but it only contains the mapped.txt files and they are all empty. I then reduced the input files to only the first 5 sequences in every file but still get the failure (now only on two files though)
Anything else I could do to trouble shoot? It mus be something with the input but I cant see anything special about it
Thanks
Astrid
Hi, It seems I have a similar issue than other users but I fail to find out what is going wrong I installed PhenotypeSeeker and the example files run succesfully. I then moved to a real dataset, I tried it out with fastq files, transformed them into fasta, had the files in different direcotries and in the same and used absolute and relativ pathes in the data.pheno file, no matter what I do running phenotypeseeker modeling data.pheno I get "Error: Could not make wordmap from file K-mer_lists," and then followed by the sample name the K-mer lists directory gets cretaed but it only contains the mapped.txt files and they are all empty. I then reduced the input files to only the first 5 sequences in every file but still get the failure (now only on two files though) Anything else I could do to trouble shoot? It mus be something with the input but I cant see anything special about it Thanks Astrid