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bioinfo-ut / PhenotypeSeeker

Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains
GNU General Public License v3.0
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An error with sample data #16

Open augustkx opened 3 years ago

augustkx commented 3 years ago

In the chi-square tests procedure, there is only 99% tests finished. And the running finished with OSError: [Errno 16] Device or resource busy: '.nfs00000006c5e62a0a000dce8d', which is related to lib/python3.7/site-packages/multiprocess/process.py Although all the outputs files are generated successfully.

Conducting the k-mer specific chi-square tests: Azithromycin: 99% tests conducted.

I will appreciate it very much if anyone could help.

erkiaun commented 3 years ago

Hi!

Haven't seen this error before. It seems that it tries to remove some file or directory that was used in communicating between processes, but this file or some file in this directory is still open. As it seems that the multiprocessed testing step remained unfinished and some multiprocessing files open, couldnt it be that your system run out of space?

However, I have made some major updates in the code, I encourage you to have a try with this updated version.

augustkx commented 3 years ago

Hi! Thanks for the update! Now, there are no errors related to multiprocesse, but there is still one point, which I am not sure if it is an error or not:

Conducting the k-mer specific chi-square tests: Azithromycin: 99% tests conducted

Screenshot from 2021-10-13 17-30-16

Is the 99% normal?