compressed gz file support

bioinfo-ut / PlasmidSeeker

A k-mer based program for the identification of known plasmids from whole-genome sequencing reads

BSD 3-Clause "New" or "Revised" License

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Closed LeonardosMageiros closed 5 years ago

LeonardosMageiros commented 5 years ago

Hi,

I am trying to run plasmidseeker using a .gz compressed file and I get the following:

When I gunzip my input file the executions proceeds normally. Is that normal? Are compressed gz fastq files not supported?

Thank you very much for your time.

Best Leonardos

mihkelvaher commented 5 years ago

Hi,

Compressed files are indeed unsupported. Currently, in the near future, it's not a planned feature to be added.

Mihkel