search

bioinfo-ut / PlasmidSeeker

A k-mer based program for the identification of known plasmids from whole-genome sequencing reads
BSD 3-Clause "New" or "Revised" License
36 stars 11 forks source link

Cannot open GenomeTester binaries #9

Closed pavlo888 closed 5 years ago

pavlo888 commented 5 years ago

Hi,

So I am trying to the plasmidseeker package but there seems to be an error with the GenomeTester binaries.

I get this printout from the binary files GenomeTester4/glistmaker: GenomeTester4/glistmaker: cannot execute binary file GenomeTester4/glistcompare: GenomeTester4/glistcompare: cannot execute binary file Finding coverage of bacterial isolate... GenomeTester4/glistmaker: GenomeTester4/glistmaker: cannot execute binary file GenomeTester4/glistcompare: GenomeTester4/glistcompare: cannot execute binary file GenomeTester4/glistcompare: GenomeTester4/glistcompare: cannot execute binary file GenomeTester4/gdistribution: GenomeTester4/gdistribution: cannot execute binary file

I have already checked for the permissions and they are all right.

By the way, I am running the package in an Mac OS environment.

Thank you for your help.

Cheers, Pablo

mihkelvaher commented 5 years ago

Hi!

The GT4 binaries are compiled in Linux. You might want to try to compile them in OSX but after a quick test it seems compiling them there is not possible at the moment. You can create an issue about it in the GenomeTester4 repository (https://github.com/bioinfo-ut/GenomeTester4).

All the best, Mihkel