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bioinfoUGR / cpgcluster

Finding CpG islands in genome sequences
http://bioinfo2.ugr.es/CpGcluster/
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cannot open file #2

Open mforoozani1 opened 6 years ago

mforoozani1 commented 6 years ago

Hello, I tried to run cpgcluster on rice genome. I got the error: Cannot open /project/maheshid/mforoo1/cpgcluster-master/cpgcluster-master/all.fa I checked my input file by using another Fasta file. But I still got the same error. Would you please help me? appreciate it!

bioinfoUGR commented 6 years ago

Hello, CpGcluster is now obsolete. You can try instead our new soft gCluster:

http://bioinfo2.ugr.es:8080/gCluster/

We have just also tried gCluster with rice...

Regards,

Jose L. Oliver Catedratico de Genetica Facultad de Ciencias Universidad de Granada E-18071-Granada, Spain Personal page: http://www.ugr.es/local/oliver Computational Epigenomics Lab: http://bioinfo2.ugr.es/ Tweet to @Jose_Oliver https://twitter.com/intent/tweet?screen_name=Jose_Oliver

Lab. de BioInformatica, Inst. de Biotecnologia Centro de Investigacion Biomedica Campus de Ciencias de la Salud E-18016-Granada, Spain

Este mensaje es confidencial; su divulgación y copia están limitadas por la ley. This message is confidential; any copy or disclosure is protected by law.

2018-03-08 21:47 GMT+01:00 Maryam notifications@github.com:

Hello, I tried to run cpgcluster on rice genome. I got the error: Cannot open /project/maheshid/mforoo1/cpgcluster-master/cpgcluster-master/all.fa I checked my input file by using another Fasta file. But I still got the same error. Would you please help me? appreciate it!

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Yippee00 commented 4 years ago

Hello, I tried to run cpgcluster on rice genome. I got the error: Cannot open /project/maheshid/mforoo1/cpgcluster-master/cpgcluster-master/all.fa I checked my input file by using another Fasta file. But I still got the same error. Would you please help me? appreciate it!

you can set the genome dir to the command, but not the genome file name.

bioinformatica commented 4 years ago

You are a genius