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bioinfoUGR / sRNAtoolbox

small RNA analysis programs: standalone jar files (sRNAbench, sRNAde, etc), manuals and Docker image
MIT License
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DE module not working #19

Open fenguita opened 1 year ago

fenguita commented 1 year ago

Hi

I tried to perform a DE experiment with already processed data. Nothing is working...

Please let me know how to retrieve the count matrix from the detection module to use another app to DE analysis. What is the file I should consider?

Best

bioinfoUGR commented 1 year ago

Sorry fenguita, "nothing is working" is kind of hard to reproduce. You can generate a count matrix from the sRNAbench view or download the individual job output as zip and retrieve your count matrix from inside. There is a manual where all files are documented, if you are after miRNAs, mature_RCadj.mat is probably what you are after.