Open klaasdewaele opened 1 year ago
Same here. I tried several different combinations of my samples but always get the same error: FileNotFoundError at /srnade/result [Errno 2] No such file or directory: 'de/ttest'
ah, I have just opened an issue myself, but it's the same problem.
Hey you all, what helped in my case was selecting the group string section (see picture with red rectangle) and retrying the sRNAde pipeline. I don't necessarily know why this fixed or rather evade the FileNotFoundError in the pipeline but maybe it works for you too!
Hi, thanks for the suggestion - I tried it, and for me it resulted in the same error. So I can't seem to find the quick fix that worked for you. Sadly the support here seems not to be very active...
Hello,
Thanks for creating such a useful tool! I greatly appreciate it since it has made many of my miRNA analyses easier and robuster.
However, currently I'm experiencing trouble using sRNAtoolbox for miRNA differential expression analysis, both with a local installation and with the webserver version.
On the webservice, I tried to launch my finished sRNAbench run (0MQXTITET1Y7B7S) with sRNAde. However, repeatedly, it aborts with the following error:
I am uncertain whether this is a problem on the webserver pipeline's side?
Regarding my local installation of sRNAtoolbox (for use with a nonmodel protozoic species), sRNAde doesn't advance beyond the 'microRNA analysis' stage, no matter how long the script runs (see log below). I'm on a Linux Ubuntu 18.04.3 with 32 GB RAM and eight 2.2 GHz CPUs, which are sufficient resources I suppose?
I use LaunchDE with the following command (and a custom samplesheet.tsv):
sudo /srv/bin/LaunchDE /shared/shared_folder/samplesheet.tsv /shared/shared_folder/final_srnatoolbox_out_srnade/ /shared/shared_folder/srnade_out
The output (sub)folders are generated, but none of the output files contain any output:
Stdout:
The logFile.txt doesn't report any errors:
Many thanks for any directions on how to troubleshoot this!