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bioinfologics / sdg

Sequence Distance Graph framework: graph + reads + mapping + analysis
MIT License
25 stars 6 forks source link

Make builds docs even when turned off #108

Closed TransGirlCodes closed 5 years ago

TransGirlCodes commented 5 years ago

cmake -DBUILD_PYTHON_INTERFACE=ON -DCMAKE_C_COMPILER=/usr/local/bin/gcc-7 -DCMAKE_CXX_COMPILER=/usr/local/bin/g++-7 -DBUILD_DOC=OFF ../

 89%] Building CXX object CMakeFiles/sdg-kmercounts.dir/src/sdg-kmercounts.cc.o
[ 90%] Linking CXX executable sdg-kmercounts
[ 90%] Built target sdg-kmercounts
Scanning dependencies of target sdg-mapper
[ 91%] Building CXX object CMakeFiles/sdg-mapper.dir/src/sdg-mapper.cc.o
[ 92%] Linking CXX executable sdg-mapper
[ 92%] Built target sdg-mapper
Scanning dependencies of target sdg-workspace
[ 93%] Building CXX object CMakeFiles/sdg-workspace.dir/src/sdg-workspace.cc.o
[ 95%] Linking CXX executable sdg-workspace
[ 95%] Built target sdg-workspace
Scanning dependencies of target Sphinx
[ 96%] Generating docs
[ 97%] Generating documentation with Sphinx, WD: /Users/bward/repos/sdg/build
Running Sphinx v2.1.2
/Users/bward/anaconda/lib/python3.6/site-packages/sphinx/util/docutils.py:311: RemovedInSphinx30Warning: function based directive support is now deprecated. Use class based directive instead.
  RemovedInSphinx30Warning)

Extension error:
Could not import extension recommonmark (exception: No module named 'recommonmark')
make[2]: *** [doc/sphinx/index.html] Error 2
make[1]: *** [CMakeFiles/Sphinx.dir/all] Error 2
make: *** [all] Error 2