Closed gonzalogacc closed 5 years ago
When trying to write a subset of the graph. ns_dg is
In [69]: type(ns_dg) Out[69]: pysdg.pysdg.DistanceGraph
In [68]: ns_dg.write_to_gfa1('ns_collapsed.gfa', [x.node_id() for x in ns_dg.get_all_nodeviews(include_disconnected=False)])
Produces the following error
--------------------------------------------------------------------------- TypeError Traceback (most recent call last) <ipython-input-68-8b8d50e41e43> in <module> ----> 1 ns_dg.write_to_gfa1('ns_collapsed.gfa', [x.node_id() for x in ns_dg.get_all_nodeviews(include_disconnected=False)]) ~/git_sources/bsg/build/pysdg/pysdg.py in write_to_gfa1(self, *args) 1607 1608 def write_to_gfa1(self, *args): -> 1609 return _pysdg.DistanceGraph_write_to_gfa1(self, *args) 1610 1611 def write_to_gfa2(self, *args): TypeError: Wrong number or type of arguments for overloaded function 'DistanceGraph_write_to_gfa1'. Possible C/C++ prototypes are: DistanceGraph::write_to_gfa1(std::string,std::vector< sgNodeID_t,std::allocator< sgNodeID_t > > const &,std::vector< double,std::allocator< double > > const &) DistanceGraph::write_to_gfa1(std::string,std::vector< sgNodeID_t,std::allocator< sgNodeID_t > > const &) DistanceGraph::write_to_gfa1(std::string)
Calling the function like this works
ws.sdg.write_to_gfa1('test.gfa', SDG.vectorSGNode([x.node_id() for x in ws.sdg.get_all_nodeviews(include_disconnected=False)]))
When trying to write a subset of the graph. ns_dg is
Produces the following error