Dump final HBV, paths and GFAs consistently

bioinfologics / w2rap-contigger

An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.

http://bioinfologics.github.io/the-w2rap-contigger/

MIT License

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Dump final HBV, paths and GFAs consistently #15

Open bjclavijo opened 7 years ago

bjclavijo commented 7 years ago

All needs to check out with the fasta representation.

bjclavijo commented 5 years ago

On the appropriate GFAs, represent gaps with empty sequences, as in SDG.

ljyanesm commented 5 years ago

Sequences are now written in lexicographically canonical orientations (compatible with SDG). Gaps for empty sequences are not yet represented in the GFA output.