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bioinfologics / w2rap-contigger

An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.
http://bioinfologics.github.io/the-w2rap-contigger/
MIT License
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Check step2 counting using large number of batches #38

Closed ljyanesm closed 6 years ago

ljyanesm commented 6 years ago

Step2 w2rap-contigger w2rap-contigger -K 200 --threads 64 (No batches): Tue Sep 25 15:04:08 2018: 3669737625 / 17919060456 kmers with Freq >= 4

w2rap-contigger -p w2rap -o . -t 48 -m 900 -d 60: Sat Mar 10 18:30:02 2018: 3687182131 / 8645611169 kmers with Freq >= 4