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bioinfomaticsCSU / MultiGuideScan

a multi-processing tool for designing CRISPR guide RNA library
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Issues with running MutliGuideScan #1

Open mattgalbraith opened 5 years ago

mattgalbraith commented 5 years ago

I have installed MultiGuideScan in a conda environment with the following dependencies installed: python==2.7.16, scikit-learn==0.16.1, coreutils, rename, biopython==1.66, pysam==0.8.3, pyfaidx==0.4.7.1, bx-python==0.7.3

However upon checking the guidescan commands can run with --help it seems that some additional dependencies (that may already be on most systems) are required: guidescan_cutting_efficiency_processer requires pandas guidescan_guidequery requires xlwt

After installing these additional dependencies, I am getting the following error for guidescan_processer --help and guidescan_bamdata --help image

This seems to be related to the commented section at lines 306-331 of ..../lib/python2.7/site-packages/guidescan/guides.py image

ssreilly commented 4 years ago

Same exact problem. anyone still working on this?