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bioinfomaticsCSU / deepsignal

Detecting methylation using signal-level features from Nanopore sequencing reads
GNU General Public License v3.0
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Installation Issue #33

Closed ckhithesh closed 4 years ago

ckhithesh commented 4 years ago

Dear Team, I am facing problem with installing deepsignal. Tensorflow 1.8.0 is not getting installed properly. Please share a link where I can download tensorflow=1.8.0

Tensorflow_installation_error

PengNi commented 4 years ago

Hi @ckhithesh ,

Thanks for your interest. Please use our latest version from github. In our test, a version of tensorflow/tensorflow-gpu<=1.13.1 will work.

Best, Peng

ckhithesh commented 4 years ago

Dear Peng, After installation of tensorflow v1.13.1. Deepsignal has installation issues. I have mentioned in txt files below. deepsignal_installation_with_python2.7.txt deepsignal_installation_with_python3.7.txt

Regards Hithesh

PengNi commented 4 years ago

Dear @ckhithesh , please download the latest version of deepsignal and try to install it again:

git clone https://github.com/bioinfomaticsCSU/deepsignal.git
cd deepsignal
python setup.py install

I updated the install requirements yesterday. BTW, python2 is not supported.

Best, Peng

ckhithesh commented 4 years ago

Dear Team, Thank you for your support. Deepsignal installed successfully. But in the step of call modifications I'm getting few errors.

Cal_modification_error.txt

Regards Hithesh

PengNi commented 4 years ago

Hi @ckhithesh , I installed tensorflow1.13.1 in an virtual environment to run deepsignal, it shows no problem.

Here are the packages in my environment: QQ截图20191127111604

I guess the issue may be caused by the improper versions of some packages like tensorflow-estimator or tensorboard?

Best, Peng