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bioinfomaticsCSU / deepsignal

Detecting methylation using signal-level features from Nanopore sequencing reads
GNU General Public License v3.0
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insertion methylation level #39

Closed Yeeok closed 4 years ago

Yeeok commented 4 years ago

Hi, Is there any way to detect DNA modifications of insertions (one type of SVs) by using deepsignal ? Or only DNA modification within reference genome regions can be detected?

Thank you.

Yeeok Kang -

PengNi commented 4 years ago

Hi @Yeeok ,

Thanks for your interest. Currently deepsignal doesn't support detecting DNA modifications of insertions. We only focus on base modifications in reference genome regions now.

Best, Peng