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bioinfomaticsCSU / deepsignal

Detecting methylation using signal-level features from Nanopore sequencing reads
GNU General Public License v3.0
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Available trained model on E.coli data? #63

Closed mandichen closed 3 years ago

mandichen commented 3 years ago

Hi there,

I wonder if it is possible to get a trained model on E.coli CpG methylation data anywhere?

Thanks in advance!

PengNi commented 3 years ago

Hi @Lamicc ,

Thanks for your interest of our work. I 'm sorry that our E. coli model was removed in our server and we didn't save a copy of the model. However, the model was trained by using E. coli R9 2D data, and it is out of date, as the most used pore chemistries of nanopore are R9.4.1, R9.5 and R10.3 now.

Best, Peng

mandichen commented 3 years ago

Thank you, Peng.