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bioinfomaticsCSU / deepsignal

Detecting methylation using signal-level features from Nanopore sequencing reads
GNU General Public License v3.0
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Questions about sequence module #77

Closed Flower9618 closed 2 years ago

Flower9618 commented 2 years ago

Hi. Happy new year! Thank you very much for sharing this excellent tool. I would like to know how do you transfer the sequence context into the fourth feature in the sequence module, is it a relationship like {A:0; T:1; C:2; G:3} ?

PengNi commented 2 years ago

@Flower9618 , yes, I transfer ACGT to 0123, then transfer the sequence of 0123 to higher dimension using embeding.