search

bioinform / longislnd

LongISLND - Long In silico Sequencing of Lengthy and Noisy Datatypes
Other
4 stars 4 forks source link

change default to false #25

Closed yunfeiguo closed 8 years ago

yunfeiguo commented 8 years ago

@bayolau

yunfeiguo commented 8 years ago

Sure. Thank you!

On Oct 27, 2016, at 5:26 PM, Marghoob Mohiyuddin notifications@github.com wrote:

@marghoob commented on this pull request.

In simulate.py https://github.com/bioinform/longislnd/pull/25:

@@ -59,7 +59,8 @@ def get_contigs(self): parser.add_argument("--max_frag", help="Maximum length of fragment", type=int, default=1000000000) parser.add_argument("--min_pass", help="Minimum passes", type=int, default=1) parser.add_argument("--max_pass", help="Maximum passes", type=int, default=1000000000)

  • parser.add_argument("--output_polymerase_read", help="shall we simulate polymerase read (including adapter)?", action='store_false')
  • parser.add_argument("--output_polymerase_read", help="shall we simulate polymerase read (including adapter)?", action='store_true')
  • parser.set_defaults(output_polymerase_read=False) It's fine for now. Just keep this in mind for the future.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/bioinform/longislnd/pull/25, or mute the thread https://github.com/notifications/unsubscribe-auth/AHYPzhY4Hoja8ufTN1U9mBHPaeQa5dS1ks5q4UFHgaJpZM4Ki47u.