better fragment mode - Githubissues

bioinform / longislnd

LongISLND - Long In silico Sequencing of Lengthy and Noisy Datatypes

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Closed yunfeiguo closed 7 years ago

yunfeiguo commented 7 years ago

in fragment mode, when --estimate_np_by_length enabled, sum up all sampled insert lengths and consider it as the length of polymerase read.
break up the polymerase read length by assuming that first bp is in insert (not in adapter), i.e. the the number of passes is calculated based on length of insert (template) and adapter except for the first (maybe full or partial) pass.
one test added

yunfeiguo commented 7 years ago

@bayolau dev is merged now.

bayolau commented 7 years ago

thanks @yunfeiguo

yunfeiguo commented 7 years ago

Great. My pleasure.