About model in simulate.py

[11malong]

In command of simulate.py, I need to give ' --model_dir xxx'. But how can I generate the model from sample.py? Can you give an example? Thank you.

[yunfeiguo]

Please see https://github.com/bioinform/longislnd/blob/master/sampling_example/ecoli/learn_and_simulate.sh you can use --input_suffix in sample.py to change input file suffix, by default, sample.py assumes all input files are in current working directory.

[11malong]

Thank you so much!