add max depth opt - Githubissues

bioinform / neusomatic

NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection

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Closed roger-liu-bina closed 5 years ago

roger-liu-bina commented 5 years ago

Add max depth for a scan in order to avoid mem blowup. Also, give warnings to reads without cigar.

msahraeian commented 5 years ago

@roger-liu-bina thanks. It sounds good to me. Can you make the default as 40000? @marghoob please review.

roger-liu-bina commented 5 years ago

Sure. Now it is 40000.

roger-liu-bina commented 5 years ago

@msahraeian read for merge