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NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection
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/bin/scan_alignments Not Found #67

Open ghost opened 3 years ago

ghost commented 3 years ago

Hi , I met "OSError: File not found: ../bin/scan_alignments" when I ran run_test.sh

Is this file missed in the source code?

msahraeian commented 3 years ago

Hi @SongboWangGit You should run build.sh and it will create the scan_alignments for you at neusomatic/bin/scan_alignments. You should use the path to this binary with the --scan_alignments_binary argument as in here.