How to deal with multiallelic variants?

bioinform / neusomatic

NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection

Other

168 stars 51 forks source link

How to deal with multiallelic variants? #80

Open leedchou opened 2 years ago

leedchou commented 2 years ago

Hi, @msahraeian

I am wondering how did you deal with those multiallelic variants. If there is a site on genome with 3 or more alternate variant alleles meets the conditions (eg. min_af), Should I keep all these alleles or a major allele?

Sincerely