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Cannot start run_rnacocktail.py #9

Closed hhg7 closed 6 years ago

hhg7 commented 6 years ago

I'm just trying to get started with RNAcocktail, but I don't see how I can get this started, I can't even get the help menu. I don't see how to get this installed and I don't see anything about this in the README files.

703404669@bioitutil2:/illumina/runs/RNASeq/rnacocktail-0.2.1/scripts$ ./run_rnacocktail.py 
Traceback (most recent call last):
  File "./run_rnacocktail.py", line 5, in <module>
    from src.main import run_pipeline
ImportError: No module named src.main
703404669@bioitutil2:/illumina/runs/RNASeq/rnacocktail-0.2.1/scripts$ ./run_rnacocktail.py -h
Traceback (most recent call last):
  File "./run_rnacocktail.py", line 5, in <module>
    from src.main import run_pipeline
ImportError: No module named src.main
703404669@bioitutil2:/illumina/runs/RNASeq/rnacocktail-0.2.1/scripts$
marghoob commented 6 years ago

@hhg7 Thanks for filing this issue. Did you try installing using pip? Please have a look at https://bioinform.github.io/rnacocktail/ (have a look at the Installing RNACocktail section).

hhg7 commented 6 years ago

@marghoob yes, pip is installed. Thanks, my goof. I thought this would install like most .tar.gz files.

marghoob commented 6 years ago

No worries, @hhg7. I am glad you were finally able to install it.