snakemake implementation support tumour-only samples.

bioinform / somaticseq

An ensemble approach to accurately detect somatic mutations using SomaticSeq

http://bioinform.github.io/somaticseq/

BSD 2-Clause "Simplified" License

189 stars 53 forks source link

snakemake implementation support tumour-only samples. #133

Open harrymatthews50 opened 1 week ago

harrymatthews50 commented 1 week ago

Hi, is it possible that the snakemake implementation supports single "tumour-only" samples? It looks as though it doesn't, or at least this usage is not described. I am making a snakemake workflow employing somaticseq for the analysis of paired and tumour-only samples. If this functionality does not exist I can contribute it...

litaifang commented 3 days ago

I don't know snakemake. The snakemake in this repo was contributed by https://github.com/0xaf1f and it was actually based on somaticseq v2 and probably wouldn't work on the current version. It'd be great if you'd like to contribute.