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bioinform
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varsim
VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
http://bioinform.github.io/varsim/
BSD 2-Clause "Simplified" License
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Bump commons-io:commons-io from 2.4 to 2.14.0
#278
dependabot[bot]
opened
1 month ago
0
Docker image does not contain necessary python env
#277
gabeng
opened
6 months ago
0
VarSim generated readnames too long for SAM/BAM
#276
gabeng
opened
6 months ago
2
somatic vcf is empty
#275
Tina610
opened
1 year ago
0
varsim somatic errors for run_randvcf
#274
Tina610
opened
1 year ago
0
Minor code refactoring
#273
dal-aayush
opened
1 year ago
0
Bump htsjdk from 2.14.3 to 3.0.1
#272
dependabot[bot]
opened
1 year ago
0
Bump jackson-databind from 2.9.10.4 to 2.12.7.1
#271
dependabot[bot]
opened
1 year ago
0
Bump jackson-databind from 2.9.10.4 to 2.13.4.1
#270
dependabot[bot]
closed
1 year ago
1
Bump jackson-databind from 2.9.10.4 to 2.12.6.1
#269
dependabot[bot]
closed
2 years ago
1
Simulate Synthetic Reads with Structural Variants for a Given DGV
#268
fardokhtsadat
opened
2 years ago
1
How to restrict the scope of read generation
#267
fardokhtsadat
closed
2 years ago
4
fix certificate issue for wget
#266
yunfeiguo
closed
2 years ago
0
Better handling of insertion validation
#265
yunfeiguo
closed
3 years ago
0
update
#264
yunfeiguo
closed
3 years ago
0
let test fail fast
#263
yunfeiguo
closed
3 years ago
0
Improve logging
#262
yunfeiguo
closed
3 years ago
0
fix samtools path
#261
yunfeiguo
closed
3 years ago
0
Varsim build successfully but python packages aren't loadable
#260
gtollefson
opened
3 years ago
12
add -bin_breaks information
#259
xues7
closed
3 years ago
4
more balanced insertion interval comparison
#258
yunfeiguo
closed
3 years ago
0
Add qual
#257
yunfeiguo
closed
3 years ago
0
Fix combine vcf
#256
yunfeiguo
closed
3 years ago
0
Bump commons-io from 2.4 to 2.7
#255
dependabot[bot]
closed
1 month ago
1
fix 0bp length validation bug
#254
yunfeiguo
closed
3 years ago
0
Add info
#253
yunfeiguo
closed
3 years ago
0
Bump jackson-databind from 2.9.10.4 to 2.10.5.1
#252
dependabot[bot]
closed
2 years ago
1
varsim install error
#251
biott
opened
3 years ago
1
Bump jackson-databind from 2.9.10.4 to 2.10.0
#250
dependabot[bot]
closed
3 years ago
1
VarSim: Large structural variants (DELs) are not simulated.
#249
bioinfo89
opened
4 years ago
0
VarSim error: ALT column is malformated: Found illegal character: 46
#248
bioinfo89
opened
4 years ago
0
handle malformatted VCF
#247
yunfeiguo
closed
4 years ago
0
Bump jackson-databind from 2.9.10.4 to 2.9.10.5
#246
dependabot[bot]
closed
4 years ago
2
fix LiftOver issue
#245
yunfeiguo
closed
4 years ago
0
Bump junit from 4.12 to 4.13.1
#244
dependabot[bot]
closed
4 years ago
0
fix version number issue
#243
yunfeiguo
closed
4 years ago
0
V0.8.6
#242
yunfeiguo
closed
4 years ago
0
Fix dgv
#241
yunfeiguo
closed
4 years ago
0
Fix sv sim
#240
yunfeiguo
closed
4 years ago
0
Varsim error: returned non-zero exit status 1
#239
bioinfo89
closed
4 years ago
15
Bump jackson-databind from 2.2.3 to 2.9.10.4
#238
dependabot[bot]
closed
4 years ago
0
Bump jackson-databind from 2.2.3 to 2.9.10.3
#237
dependabot[bot]
closed
4 years ago
1
fix ART download URL
#236
yunfeiguo
closed
4 years ago
0
art binary
#235
yunfeiguo
closed
4 years ago
0
fix for contigs containing underscore
#234
yunfeiguo
closed
4 years ago
0
Bump jackson-databind from 2.2.3 to 2.9.10.1
#233
dependabot[bot]
closed
4 years ago
1
fix build
#232
shannog2
closed
4 years ago
0
bump version
#231
yunfeiguo
closed
5 years ago
0
Reads covered by variants
#230
ranijames
opened
5 years ago
1
[ERROR] Failed to execute goal org.codehaus.mojo:versions-maven-plugin:2.7:set (default-cli): Goal requires a project to execute but there is no POM in this directory
#229
zhangyafeng1
opened
5 years ago
5
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