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bioinformagic / monica

MinION Open Nucleotide Identifier for Continuous Analysis - an open source pathogen identifier for real-time analysis on MinION output
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use `piper_pan.shell_runner()` #5

Closed simozhou closed 5 years ago

simozhou commented 5 years ago

https://github.com/bioinformagic/monica/blob/03ba4b767ab35648df38028c0b6050ca9f216a2b/libs/GoodOvernight.py#L46

@DrQuestion & Iteration team,

can you please switch to the standard of the project with shell_runner please? This is meant exclusively to keep code consistent across the whole project.

The code for shell_runner (to see how it works) is in src/piper_pan.py.

Thank you.