I followed the method “Executing BayesTyper on sample batches” to genotyping my samples, when I Combine the the batch vcf files using bcftools merge, Error occured:
Failed to open bayestyper_rmdup_DH_00_unit_1/bayestyper-sk-b73.vcf.gz: not compressed with bgzip
it seems like bayestypre use gzip to commpress the vcf files, But bcftools require bgzip commpressed vcf files
I followed the method “Executing BayesTyper on sample batches” to genotyping my samples, when I Combine the the batch vcf files using bcftools merge, Error occured: Failed to open bayestyper_rmdup_DH_00_unit_1/bayestyper-sk-b73.vcf.gz: not compressed with bgzip it seems like bayestypre use gzip to commpress the vcf files, But bcftools require bgzip commpressed vcf files