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bioinformatics-centre / BayesTyper

A method for variant graph genotyping based on exact alignment of k-mers
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how to run bayestyper #44

Open 123xyl opened 1 year ago

123xyl commented 1 year ago

i Is it necessary to install MANTA?

jonassibbesen commented 1 year ago

Hi,

No, Manta is not a requirement to run BayesTyper. The method is mentioned as part of an example pipeline for predicting candidate variants (using Manta and other methods) and genotyping them with BayesTyper.

123xyl commented 1 year ago

how to run test

---Original--- From: "Jonas Andreas @.> Date: Mon, Oct 31, 2022 19:08 PM To: @.>; Cc: @.**@.>; Subject: Re: [bioinformatics-centre/BayesTyper] how to run bayestyper (Issue#44)

Hi,

No, Manta is not a requirement to run BayesTyper. The method is mentioned as part of an example pipeline for predicting candidate variants (using Manta and other methods) and genotyping them with BayesTyper.

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