bioinformatics-centre / kaiju

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
http://kaiju.binf.ku.dk
GNU General Public License v3.0
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770904 killed ./kaiju -z 64 -t nodes.dmp -f kaiju_db_nr.fmi -i -j -o kaiju_1.out #229

Open qinjunjun opened 2 years ago

qinjunjun commented 2 years ago

Hello,thank you for this useful tool, I use this command line: ./kaiju -z 64 -t nodes.dmp -f kaiju_db_nr.fmi -i /data1/qinjunjun/zhu_bingduzu/clean_data/1_final_R1.fastq.gz -j /data1/qinjunjun/zhu_bingduzu/clean_data/1_final_R2.fastq.gz -o kaiju_1.out [1] 770904 killed ./kaiju -z 64 -t nodes.dmp -f kaiju_db_nr.fmi -i -j -o kaiju_1.out

-rw-r--r-- 1 qinjunjun externals 160M Mar 11 14:12 1_final_R2.fastq.gz -rw-r--r-- 1 qinjunjun externals 144M Mar 11 14:12 1_final_R1.fastq.gz

Hot to solve this problem? Thank you a lot.

pmenzel commented 2 years ago

Check that you have enough RAM and CPUs available. See the table in the README for RAM requirements.

qinjunjun commented 2 years ago

Check that you have enough RAM and CPUs available. See the table in the README for RAM requirements.

Thank you.