search

bioinformatics-centre / kaiju

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
http://kaiju.binf.ku.dk
GNU General Public License v3.0
260 stars 68 forks source link

Missing argument -p for kaijuReport #25

Closed rasmusagren closed 7 years ago

rasmusagren commented 7 years ago

kaijuReport doesn't take -p as an argument for printing full taxon paths.

pmenzel commented 7 years ago

Do you have the latest version from GitHub? That option was introduced in https://github.com/bioinformatics-centre/kaiju/commit/3b09ea49caf3484b9ae4a0e61474c37ec802e045

rasmusagren commented 7 years ago

Well, at least I thought I had the latest version :) Turns out that I was using the latest release (1.4.4) instead. Maybe it would be good to make a new release though, since the -p flag is mentioned in the manual? I speak in self interest since what I'm doing requires a tarball.

pmenzel commented 7 years ago

Probably you are right, in that it's time to make a new release, then all the latest commits are bundled..

btw, this tarball should always have the latest version from GitHub.

rasmusagren commented 7 years ago

Great! I didn't know that there was a master tarball functionality. Good to know, but it wouldn't have helped me now since I'd need the md5 checksum to be fixed.

pmenzel commented 7 years ago

I made a new release for 1.4.5, you can also download a tarball for that particular version, which will not change. There is also a tarball for statically linked binaries for Linux.