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bioinformatics-centre / kaiju

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
http://kaiju.binf.ku.dk
GNU General Public License v3.0
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Issue with extracting taxdump #266

Open Mayurk619 opened 1 year ago

Mayurk619 commented 1 year ago

I cannot seem to figure out if this is an issue or not. I'm using kaiju-makedb in cluster. It required taxdump that is why I added that file in the directory. I also did md5sum for the file but it didn't match with server record. I downloaded the file multiple times manually but wasn't fixed. Is there a way to do it without this? Kaiju error

This is my job submission script and the command that I used. kaiju job submit

pmenzel commented 1 year ago

How about running kaiju-makedb without the --no-download option? Generally, it downloads all necessary files automatically.