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bioinformatics-centre / kaiju

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
http://kaiju.binf.ku.dk
GNU General Public License v3.0
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Compilation issues #42

Closed gazalk closed 7 years ago

gazalk commented 7 years ago

Hi, I'm trying to compile the program, but I'm facing this error because the header file which is included in file hspfilter_collector.c is not available: error: No rule to make target '/algo/blast/core/blast_hits_priv.h', needed by 'obj/hspfilter_collector.o'.

-Gazal

pmenzel commented 7 years ago

Hi, I forgot to include that file (and maybe others too). Which compiler/version do you use? You can try to download the file here and put it into the directory src/include/ncbi-blast+/algo/blast/core of your kaiju installation and run make again..

gazalk commented 7 years ago

Thank you!! Yes, I see your makefile, hspfilter_collector.c is not compiling (you have included extra files). I was trying to compile it using Qt Creator because I want to do some testing on the code, I changed the makefile locally. It compiles perfectly fine now - with compiler g++ 5.4(c++11) on Ubuntu.