bioinformatics-core-shared-training / Bulk_RNAseq_Course_Base

https://bioinformatics-core-shared-training.github.io/Bulk_RNAseq_Course_Base/
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timing of exploratory analysis (day 1) #20

Open tavareshugo opened 1 year ago

tavareshugo commented 1 year ago

Since adjusting the schedule to have all of the stats on day 2, the session of EDA is a bit tight on day 1. There's also some confusion from participants about the vst/rlog transform, partially because the slides for this are actually on the first presentation of day 2.

We could try to:

AshKernow commented 8 months ago

Maybe we could move the discussion about transformation to some introductory slides, do it with code is more time consuming than it needs to be. Also, I think perhaps we could just use rlog and mention that there is also vst and what the differences are in the slides.