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bioinformatics-ua / dicoogle

Dicoogle - Open Source PACS
http://www.dicoogle.com/
GNU General Public License v3.0
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HTTP ERROR 403 When Building and Running Dockerfile #431

Closed rewt closed 3 years ago

rewt commented 3 years ago

Building the dockerfile as described:

docker build -t dicoogle .

and running mapped to port 8080

docker run -p 8080:8080 dicoogle

produces the following when browsing locally:

HTTP ERROR 403 Problem accessing /. Reason:

Forbidden

Powered by Jetty://

Can only seem to find this issue which appears to have been merged.

What is the best way to run dicoogle in docker? Is there a working image available anywhere?

Enet4 commented 3 years ago

That outcome from "HTTP /" often happens when the web application fails to build. Can you provide the full log of the building process?

rewt commented 3 years ago

[INFO] Installing node version v12.16.1 [INFO] Downloading https://nodejs.org/dist/v12.16.1/node-v12.16.1-linux-x64.tar.gz to /root/.m2/repository/com/github/eirslett/node/12.16.1/node-12.16.1-linux-x64.tar.gz [INFO] No proxies configured [INFO] No proxy was configured, downloading directly [INFO] Unpacking /root/.m2/repository/com/github/eirslett/node/12.16.1/node-12.16.1-linux-x64.tar.gz into /root/dicoogle/dicoogle/target/node/tmp [INFO] Copying node binary from /root/dicoogle/dicoogle/target/node/tmp/node-v12.16.1-linux-x64/bin/node to /root/dicoogle/dicoogle/target/node/node [INFO] Installed node locally. [INFO] Installing npm version 6.11.3 [INFO] Downloading https://registry.npmjs.org/npm/-/npm-6.11.3.tgz to /root/.m2/repository/com/github/eirslett/npm/6.11.3/npm-6.11.3.tar.gz [INFO] No proxies configured [INFO] No proxy was configured, downloading directly [INFO] Unpacking /root/.m2/repository/com/github/eirslett/npm/6.11.3/npm-6.11.3.tar.gz into /root/dicoogle/dicoogle/target/node/node_modules [INFO] Installed npm locally. [INFO] [INFO] --- frontend-maven-plugin:1.7.5:npm (npm install) @ dicoogle --- [INFO] Running 'npm install' in /root/dicoogle/dicoogle/src/main/resources/webapp [INFO] [INFO] > husky@0.14.3 install /root/dicoogle/dicoogle/src/main/resources/webapp/node_modules/husky [INFO] > node ./bin/install.js [INFO] [INFO] husky [INFO] setting up Git hooks [INFO] done [INFO] [INFO] [INFO] > node-sass@4.13.1 install /root/dicoogle/dicoogle/src/main/resources/webapp/node_modules/node-sass [INFO] > node scripts/install.js [INFO] [INFO] Downloading binary from https://github.com/sass/node-sass/releases/download/v4.13.1/linux-x64-72_binding.node [INFO] Download complete [INFO] Binary saved to /root/dicoogle/dicoogle/src/main/resources/webapp/node_modules/node-sass/vendor/linux-x64-72/binding.node [INFO] Caching binary to /root/.npm/node-sass/4.13.1/linux-x64-72_binding.node [INFO] [INFO] > core-js@2.6.11 postinstall /root/dicoogle/dicoogle/src/main/resources/webapp/node_modules/core-js [INFO] > node -e "try{require('./postinstall')}catch(e){}" [INFO] [INFO] Thank you for using core-js ( https://github.com/zloirock/core-js ) for polyfilling JavaScript standard library! [INFO] [INFO] The project needs your help! Please consider supporting of core-js on Open Collective or Patreon: [INFO] > https://opencollective.com/core-js [INFO] > https://www.patreon.com/zloirock [INFO] [INFO] Also, the author of core-js ( https://github.com/zloirock ) is looking for a good job -) [INFO] [INFO] [INFO] > document-register-element@1.14.3 postinstall /root/dicoogle/dicoogle/src/main/resources/webapp/node_modules/document-register-element [INFO] > lightercollective [INFO] [INFO] [INFO] :SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS: [INFO] ,SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiSSS, [INFO] .iSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiSSi. [INFO] sSSSSirrrrrrrrrr;;;;;;;;;;;;siiSSs [INFO] rSSSSi.......... .siiSSr [INFO] ;SSSSS, ...,,,,,...........,iiiSS; [INFO] :SSSSS: . ,iiiiiisssssssssssiiiSS: [INFO] ,SSSSS;....sSiiiissssssssssiiiSSS, [INFO] .iSSSSr....,,,,,,..........riiSSi. [INFO] sSSSSs.... riiSSs [INFO] rSSSSSr;;;;;;;;;;;;;;. .siiSSr [INFO] ;SSSSSr;;;;S5SSSiiiii. ,iiiSS; [INFO] :SSSSS; .iSSSSiiiir :iiiSS: [INFO] .SSSSSr....,:;rrr;:,. ;iiSSS. [INFO] .iSSSSs... .. .riiSSi. [INFO] rSSSSSisr;::,.. .,,:;rriiiSSr [INFO] ;SSSSSSSSSSSiisrrsiiiiiiiiiSS; [INFO] :iSSSSSSSSSSSSSiiiiiiiiSSSSSi: [INFO] .,:;;rsiSSSSSSSSSSSSisr;::,. [INFO] .,:;rsiisr;:,. [INFO] [INFO] [INFO] *** Thank you for using document-register-element! *** [INFO] [INFO] Please consider donating to our open collective [INFO] to help us maintain this package. [INFO] [INFO] https://opencollective.com/document-register-element/donate [INFO] [INFO] *** [INFO] [INFO] [INFO] > node-sass@4.13.1 postinstall /root/dicoogle/dicoogle/src/main/resources/webapp/node_modules/node-sass [INFO] > node scripts/build.js [INFO] [INFO] Binary found at /root/dicoogle/dicoogle/src/main/resources/webapp/node_modules/node-sass/vendor/linux-x64-72/binding.node [INFO] Testing binary [INFO] Binary is fine [WARNING] npm WARN optional SKIPPING OPTIONAL DEPENDENCY: fsevents@1.2.9 (node_modules/fsevents): [WARNING] npm WARN notsup SKIPPING OPTIONAL DEPENDENCY: Unsupported platform for fsevents@1.2.9: wanted {"os":"darwin","arch":"any"} (current: {"os":"linux","arch":"x64"}) [ERROR] [INFO] added 1499 packages from 741 contributors and audited 1566 packages in 38.067s [INFO] found 741 vulnerabilities (601 low, 4 moderate, 136 high) [INFO] runnpm audit fixto fix them, ornpm audit` for details [INFO] [INFO] --- maven-resources-plugin:2.7:resources (default-resources) @ dicoogle --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] Copying 40 resources [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ dicoogle --- [INFO] Compiling 158 source files to /root/dicoogle/dicoogle/target/classes [WARNING] /root/dicoogle/dicoogle/src/main/java/pt/ua/dicoogle/core/settings/LegacyServerSettings.java:[29,26] [deprecation] XMLSupport in pt.ua.dicoogle.core has been deprecated [WARNING] /root/dicoogle/dicoogle/src/main/java/pt/ua/dicoogle/server/web/DicoogleWeb.java:[33,41] [deprecation] IndexerServlet in pt.ua.dicoogle.server.web.servlets has been deprecated [WARNING] /root/dicoogle/dicoogle/src/main/java/pt/ua/dicoogle/core/settings/ServerSettingsManager.java:[27,26] [deprecation] XMLSupport in pt.ua.dicoogle.core has been deprecated [WARNING] /root/dicoogle/dicoogle/src/main/java/pt/ua/dicoogle/core/settings/LegacyServerSettings.java:[29,26] [deprecation] XMLSupport in pt.ua.dicoogle.core has been deprecated [WARNING] /root/dicoogle/dicoogle/src/main/java/pt/ua/dicoogle/server/web/DicoogleWeb.java:[33,41] [deprecation] IndexerServlet in pt.ua.dicoogle.server.web.servlets has been deprecated [WARNING] /root/dicoogle/dicoogle/src/main/java/pt/ua/dicoogle/core/settings/ServerSettingsManager.java:[27,26] [deprecation] XMLSupport in pt.ua.dicoogle.core has been deprecated [WARNING] /root/dicoogle/dicoogle/src/main/java/pt/ua/dicoogle/core/settings/LegacyServerSettings.java:[29,26] [deprecation] XMLSupport in pt.ua.dicoogle.core has been deprecated [WARNING] /root/dicoogle/dicoogle/src/main/java/pt/ua/dicoogle/server/web/DicoogleWeb.java:[33,41] [deprecation] IndexerServlet in pt.ua.dicoogle.server.web.servlets has been deprecated [WARNING] /root/dicoogle/dicoogle/src/main/java/pt/ua/dicoogle/core/settings/ServerSettingsManager.java:[27,26] [deprecation] XMLSupport in pt.ua.dicoogle.core has been deprecated [WARNING] /root/dicoogle/dicoogle/src/main/java/pt/ua/dicoogle/plugins/PluginController.java:[378,21] [deprecation] handles(URI) in StorageInterface has been deprecated [WARNING] /root/dicoogle/dicoogle/src/main/java/pt/ua/dicoogle/plugins/PluginController.java:[409,21] [deprecation] handles(URI) in StorageInterface has been deprecated [WARNING] /root/dicoogle/dicoogle/src/main/java/pt/ua/dicoogle/plugins/PluginController.java:[783,13] [deprecation] handles(URI) in StorageInterface has been deprecated [WARNING] /root/dicoogle/dicoogle/src/main/java/pt/ua/dicoogle/server/web/servlets/management/ForceIndexing.java:[123,28] non-varargs call of varargs method with inexact argument type for last parameter; [WARNING] for a non-varargs call and to suppress this warning /root/dicoogle/dicoogle/src/main/java/pt/ua/dicoogle/server/web/DicoogleWeb.java:[186,37] [deprecation] IndexerServlet in pt.ua.dicoogle.server.web.servlets has been deprecated [WARNING] /root/dicoogle/dicoogle/src/main/java/pt/ua/dicoogle/server/web/DicoogleWeb.java:[187,37] [deprecation] SettingsServlet in pt.ua.dicoogle.server.web.servlets has been deprecated [WARNING] /root/dicoogle/dicoogle/src/main/java/pt/ua/dicoogle/core/settings/ServerSettingsManager.java:[83,47] [deprecation] XMLSupport in pt.ua.dicoogle.core has been deprecated [WARNING] /root/dicoogle/dicoogle/src/main/java/pt/ua/dicoogle/core/settings/ServerSettingsManager.java:[128,23] [deprecation] XMLSupport in pt.ua.dicoogle.core has been deprecated [WARNING] /root/dicoogle/dicoogle/src/main/java/pt/ua/dicoogle/plugins/DefaultFileStoragePlugin.java:[79,16] [deprecation] handles(URI) in StorageInterface has been deprecated [INFO] [INFO] --- maven-resources-plugin:2.7:testResources (default-testResources) @ dicoogle --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 5 resources [INFO] [INFO] --- maven-compiler-plugin:2.3.2:testCompile (default-testCompile) @ dicoogle --- [INFO] Compiling 7 source files to /root/dicoogle/dicoogle/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ dicoogle --- [INFO] Surefire report directory: /root/dicoogle/dicoogle/target/surefire-reports Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/surefire/surefire-junit4/2.12.4/surefire-junit4-2.12.4.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/surefire/surefire-junit4/2.12.4/surefire-junit4-2.12.4.pom (2.4 kB at 50 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/surefire/surefire-providers/2.12.4/surefire-providers-2.12.4.pom Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/surefire/surefire-providers/2.12.4/surefire-providers-2.12.4.pom (2.3 kB at 53 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/surefire/surefire-junit4/2.12.4/surefire-junit4-2.12.4.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/surefire/surefire-junit4/2.12.4/surefire-junit4-2.12.4.jar (37 kB at 697 kB/s)

T E S T S

Running pt.ua.dicoogle.core.auth.TestRoles Tests run: 2, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.017 sec Running pt.ua.dicoogle.core.auth.TestUsers Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.551 sec Running pt.ua.dicoogle.core.plugins.InjectionTest DEBUG plugins.PluginPreparer (PluginPreparer.java:63) - Looking for annotations Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.323 sec Running pt.ua.dicoogle.core.settings.LegacyServerSettingsTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.165 sec Running pt.ua.dicoogle.core.settings.ServerSettingsTest Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.268 sec Running pt.ua.dicoogle.webui.CamelizeTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec

Results :

Tests run: 12, Failures: 0, Errors: 0, Skipped: 2

[INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ dicoogle --- [INFO] Building jar: /root/dicoogle/dicoogle/target/dicoogle.jar [INFO] [INFO] --- maven-shade-plugin:2.3:shade (default) @ dicoogle --- [WARNING] Map in class org.apache.maven.plugins.shade.resource.ManifestResourceTransformer declares value type as: class java.util.jar.Attributes but saw: class java.lang.String at runtime [WARNING] Map in class org.apache.maven.plugins.shade.resource.ManifestResourceTransformer declares value type as: class java.util.jar.Attributes but saw: class java.lang.String at runtime [WARNING] Map in class org.apache.maven.plugins.shade.resource.ManifestResourceTransformer declares value type as: class java.util.jar.Attributes but saw: class java.lang.String at runtime [WARNING] Map in class org.apache.maven.plugins.shade.resource.ManifestResourceTransformer declares value type as: class java.util.jar.Attributes but saw: class java.lang.String at runtime [WARNING] Map in class org.apache.maven.plugins.shade.resource.ManifestResourceTransformer declares value type as: class java.util.jar.Attributes but saw: class java.lang.String at runtime [WARNING] Map in class org.apache.maven.plugins.shade.resource.ManifestResourceTransformer declares value type as: class java.util.jar.Attributes but saw: class java.lang.String at runtime [WARNING] Map in class org.apache.maven.plugins.shade.resource.ManifestResourceTransformer declares value type as: class java.util.jar.Attributes but saw: class java.lang.String at runtime [INFO] Including jaidcm4che:jai_imageio:jar:1.1 in the shaded jar. [INFO] Including at.favre.lib:bcrypt:jar:0.9.0 in the shaded jar. [INFO] Including at.favre.lib:bytes:jar:1.3.0 in the shaded jar. [INFO] Including javax.xml.bind:jaxb-api:jar:2.3.0 in the shaded jar. [INFO] Including net.sf.json-lib:json-lib:jar:jdk15:2.4 in the shaded jar. [INFO] Including commons-beanutils:commons-beanutils:jar:1.8.0 in the shaded jar. [INFO] Including commons-collections:commons-collections:jar:3.2.1 in the shaded jar. [INFO] Including commons-lang:commons-lang:jar:2.5 in the shaded jar. [INFO] Including commons-logging:commons-logging:jar:1.1.1 in the shaded jar. [INFO] Including net.sf.ezmorph:ezmorph:jar:1.0.6 in the shaded jar. [INFO] Including com.fasterxml.jackson.core:jackson-core:jar:2.9.5 in the shaded jar. [INFO] Including com.fasterxml.jackson.core:jackson-annotations:jar:2.9.5 in the shaded jar. [INFO] Including com.fasterxml.jackson.core:jackson-databind:jar:2.9.10.4 in the shaded jar. [INFO] Including com.fasterxml.jackson.dataformat:jackson-dataformat-xml:jar:2.9.5 in the shaded jar. [INFO] Including com.fasterxml.jackson.module:jackson-module-jaxb-annotations:jar:2.9.5 in the shaded jar. [INFO] Including org.codehaus.woodstox:stax2-api:jar:3.1.4 in the shaded jar. [INFO] Including com.fasterxml.woodstox:woodstox-core:jar:5.0.3 in the shaded jar. [INFO] Including dcm4che:dcm4che-imageio:jar:2.0.29 in the shaded jar. [INFO] Including dcm4che:dcm4che-core:jar:2.0.29 in the shaded jar. [INFO] Including dcm4che:dcm4che-image:jar:2.0.29 in the shaded jar. [INFO] Including org.dicoogle.aclmanager:aclmanager:jar:1.0-SNAPSHOT in the shaded jar. [INFO] Including org.jdom:jdom2:jar:0.0.6-BETA in the shaded jar. [INFO] Including pt.ua.ieeta:dicoogle-sdk:jar:3.0.0-SNAPSHOT in the shaded jar. [INFO] Including commons-configuration:commons-configuration:jar:1.9 in the shaded jar. [INFO] Including dcm4che:dcm4che-net:jar:2.0.29 in the shaded jar. [INFO] Including fakepath:jspf.core:jar:1.0.2 in the shaded jar. [INFO] Including org.restlet.jse:org.restlet:jar:2.1.2 in the shaded jar. [INFO] Including org.restlet.jse:org.restlet.ext.json:jar:2.1.2 in the shaded jar. [INFO] Including org.restlet.jse:org.restlet.lib.org.json:jar:2.0 in the shaded jar. [INFO] Including org.eclipse.jetty:jetty-servlet:jar:9.0.3.v20130506 in the shaded jar. [INFO] Including org.eclipse.jetty:jetty-security:jar:9.0.3.v20130506 in the shaded jar. [INFO] Including org.apache.commons:commons-lang3:jar:3.4 in the shaded jar. [INFO] Including org.apache.commons:commons-collections4:jar:4.0 in the shaded jar. [INFO] Including pt.ua.ieeta:dicoogle-sdk-ext:jar:3.0.0-SNAPSHOT in the shaded jar. [INFO] Including dom4j:dom4j:jar:1.6.1 in the shaded jar. [INFO] Including xml-apis:xml-apis:jar:1.0.b2 in the shaded jar. [INFO] Including org.eclipse.jetty:jetty-server:jar:9.0.3.v20130506 in the shaded jar. [INFO] Including org.eclipse.jetty.orbit:javax.servlet:jar:3.0.0.v201112011016 in the shaded jar. [INFO] Including org.eclipse.jetty:jetty-http:jar:9.0.3.v20130506 in the shaded jar. [INFO] Including org.eclipse.jetty:jetty-io:jar:9.0.3.v20130506 in the shaded jar. [INFO] Including org.eclipse.jetty:jetty-webapp:jar:9.0.3.v20130506 in the shaded jar. [INFO] Including org.eclipse.jetty:jetty-xml:jar:9.0.3.v20130506 in the shaded jar. [INFO] Including org.eclipse.jetty:jetty-servlets:jar:9.0.3.v20130506 in the shaded jar. [INFO] Including org.eclipse.jetty:jetty-continuation:jar:9.0.3.v20130506 in the shaded jar. [INFO] Including org.eclipse.jetty:jetty-util:jar:9.0.3.v20130506 in the shaded jar. [INFO] Including org.restlet.jee:org.restlet.ext.servlet:jar:2.1.2 in the shaded jar. [INFO] Including org.restlet.jee:org.restlet:jar:2.1.2 in the shaded jar. [INFO] Including commons-codec:commons-codec:jar:1.8 in the shaded jar. [INFO] Including commons-io:commons-io:jar:2.4 in the shaded jar. [INFO] Including com.google.guava:guava:jar:19.0 in the shaded jar. [INFO] Including metal.utils:metal.utils.fileiterator:jar:1.0 in the shaded jar. [INFO] Including commons-cli:commons-cli:jar:1.2 in the shaded jar. [INFO] Including org.slf4j:slf4j-api:jar:1.7.12 in the shaded jar. [INFO] Including org.apache.logging.log4j:log4j-slf4j-impl:jar:2.2 in the shaded jar. [INFO] Including org.apache.logging.log4j:log4j-api:jar:2.2 in the shaded jar. [INFO] Including org.apache.logging.log4j:log4j-core:jar:2.2 in the shaded jar. [INFO] Including net.kencochrane.raven:raven-log4j2:jar:5.0.2 in the shaded jar. [INFO] Including net.kencochrane.raven:raven:jar:5.0.2 in the shaded jar. [WARNING] dicoogle-sdk-ext.jar, dicoogle-sdk.jar, jetty-servlet-9.0.3.v20130506.jar define 38 overlappping classes: [WARNING] - org.eclipse.jetty.servlet.FilterMapping [WARNING] - org.eclipse.jetty.servlet.ServletContextHandler [WARNING] - org.eclipse.jetty.servlet.FilterMapping$1 [WARNING] - org.eclipse.jetty.servlet.Invoker [WARNING] - org.eclipse.jetty.servlet.FilterHolder [WARNING] - org.eclipse.jetty.servlet.Holder [WARNING] - org.eclipse.jetty.servlet.jmx.HolderMBean [WARNING] - org.eclipse.jetty.servlet.ServletContextHandler$JspConfig [WARNING] - org.eclipse.jetty.servlet.DefaultServlet [WARNING] - org.eclipse.jetty.servlet.ServletHolder$SingleThreadedWrapper [WARNING] - 28 more... [WARNING] dicoogle-sdk-ext.jar, jackson-annotations-2.9.5.jar define 68 overlappping classes: [WARNING] - com.fasterxml.jackson.annotation.JsonAutoDetect [WARNING] - com.fasterxml.jackson.annotation.JsonInclude [WARNING] - com.fasterxml.jackson.annotation.ObjectIdGenerators [WARNING] - com.fasterxml.jackson.annotation.JsonFormat$Features [WARNING] - com.fasterxml.jackson.annotation.JsonFormat$Feature [WARNING] - com.fasterxml.jackson.annotation.JsonIgnore [WARNING] - com.fasterxml.jackson.annotation.JsonSetter [WARNING] - com.fasterxml.jackson.annotation.JsonTypeInfo$None [WARNING] - com.fasterxml.jackson.annotation.JsonFormat$Shape [WARNING] - com.fasterxml.jackson.annotation.JsonSubTypes [WARNING] - 58 more... [WARNING] dicoogle-sdk-ext.jar, dicoogle-sdk.jar, jackson-databind-2.9.10.4.jar define 624 overlappping classes: [WARNING] - com.fasterxml.jackson.databind.introspect.AnnotationCollector$NoAnnotations [WARNING] - com.fasterxml.jackson.databind.BeanDescription [WARNING] - com.fasterxml.jackson.databind.deser.impl.BeanAsArrayBuilderDeserializer [WARNING] - com.fasterxml.jackson.databind.introspect.AnnotatedMethodMap [WARNING] - com.fasterxml.jackson.databind.SerializerProvider [WARNING] - com.fasterxml.jackson.databind.introspect.AnnotationCollector$OneAnnotation [WARNING] - com.fasterxml.jackson.databind.ser.std.StaticListSerializerBase [WARNING] - com.fasterxml.jackson.databind.ser.std.NumberSerializers$ShortSerializer [WARNING] - com.fasterxml.jackson.databind.ser.BeanSerializerFactory [WARNING] - com.fasterxml.jackson.databind.introspect.AnnotationCollector$TwoAnnotations [WARNING] - 614 more... [WARNING] dicoogle-sdk-ext.jar, org.restlet-2.1.2.jar, dicoogle-sdk.jar, org.restlet-2.1.2.jar define 399 overlappping classes: [WARNING] - org.restlet.engine.header.MethodReader [WARNING] - org.restlet.engine.adapter.HttpRequest [WARNING] - org.restlet.util.StringReadingListener [WARNING] - org.restlet.engine.log.SimplerFormatter [WARNING] - org.restlet.data.Cookie [WARNING] - org.restlet.engine.connector.HttpInboundRequest [WARNING] - org.restlet.resource.Put [WARNING] - org.restlet.engine.connector.ServerOutboundWay [WARNING] - org.restlet.engine.application.ApplicationHelper$1 [WARNING] - org.restlet.engine.io.BioUtils$2 [WARNING] - 389 more... [WARNING] dicoogle-sdk-ext.jar, dicoogle-sdk.jar, commons-configuration-1.9.jar define 192 overlappping classes: [WARNING] - org.apache.commons.configuration.tree.xpath.ConfigurationNodePointerFactory [WARNING] - org.apache.commons.configuration.plist.PropertyListConfiguration$1 [WARNING] - org.apache.commons.configuration.tree.ExpressionEngine [WARNING] - org.apache.commons.configuration.plist.XMLPropertyListConfiguration$XMLPropertyListHandler [WARNING] - org.apache.commons.configuration.ConfigurationMap$ConfigurationSet$ConfigurationSetIterator [WARNING] - org.apache.commons.configuration.Configuration [WARNING] - org.apache.commons.configuration.ConfigurationFactory$ConfigurationBuilder [WARNING] - org.apache.commons.configuration.MultiFileHierarchicalConfiguration [WARNING] - org.apache.commons.configuration.BaseConfiguration [WARNING] - org.apache.commons.configuration.DefaultConfigurationBuilder$1 [WARNING] - 182 more... [WARNING] dicoogle-sdk-ext.jar, commons-beanutils-1.8.0.jar, commons-collections-3.2.1.jar, dicoogle-sdk.jar define 10 overlappping classes: [WARNING] - org.apache.commons.collections.FastHashMap$EntrySet [WARNING] - org.apache.commons.collections.FastHashMap$KeySet [WARNING] - org.apache.commons.collections.FastHashMap$CollectionView$CollectionViewIterator [WARNING] - org.apache.commons.collections.ArrayStack [WARNING] - org.apache.commons.collections.FastHashMap$Values [WARNING] - org.apache.commons.collections.FastHashMap$CollectionView [WARNING] - org.apache.commons.collections.FastHashMap$1 [WARNING] - org.apache.commons.collections.Buffer [WARNING] - org.apache.commons.collections.FastHashMap [WARNING] - org.apache.commons.collections.BufferUnderflowException [WARNING] dicoogle-sdk-ext.jar, dicoogle-sdk.jar, jetty-http-9.0.3.v20130506.jar define 46 overlappping classes: [WARNING] - org.eclipse.jetty.http.HttpParser$HttpHandler [WARNING] - org.eclipse.jetty.http.HttpParser [WARNING] - org.eclipse.jetty.http.HttpParser$RequestHandler [WARNING] - org.eclipse.jetty.http.HttpTester$1 [WARNING] - org.eclipse.jetty.http.HttpGenerator$PreparedResponse [WARNING] - org.eclipse.jetty.http.HttpFields$2 [WARNING] - org.eclipse.jetty.http.MimeTypes$Type [WARNING] - org.eclipse.jetty.http.HttpGenerator$Info [WARNING] - org.eclipse.jetty.http.HttpParser$1 [WARNING] - org.eclipse.jetty.http.HttpTester [WARNING] - 36 more... [WARNING] dicoogle-sdk-ext.jar, commons-collections4-4.0.jar, dicoogle-sdk.jar define 431 overlappping classes: [WARNING] - org.apache.commons.collections4.trie.AbstractPatriciaTrie$KeySet$KeyIterator [WARNING] - org.apache.commons.collections4.map.Flat3Map$KeySet [WARNING] - org.apache.commons.collections4.set.AbstractSetDecorator [WARNING] - org.apache.commons.collections4.bidimap.TreeBidiMap$ViewMapIterator [WARNING] - org.apache.commons.collections4.iterators.EntrySetMapIterator [WARNING] - org.apache.commons.collections4.bidimap.AbstractDualBidiMap$View [WARNING] - org.apache.commons.collections4.set.CompositeSet$SetMutator [WARNING] - org.apache.commons.collections4.functors.PrototypeFactory$PrototypeSerializationFactory [WARNING] - org.apache.commons.collections4.map.MultiValueMap$ValuesIterator [WARNING] - org.apache.commons.collections4.iterators.AbstractListIteratorDecorator [WARNING] - 421 more... [WARNING] json-lib-2.4-jdk15.jar, dicoogle-sdk-ext.jar, dicoogle-sdk.jar define 98 overlappping classes: [WARNING] - net.sf.json.processors.DefaultValueProcessor [WARNING] - net.sf.json.groovy.JsonSlurper [WARNING] - net.sf.json.JSONString [WARNING] - net.sf.json.util.CycleDetectionStrategy$StrictCycleDetectionStrategy [WARNING] - net.sf.json.util.CycleDetectionStrategy [WARNING] - net.sf.json.processors.JsonVerifier [WARNING] - net.sf.json.processors.DefaultValueProcessorMatcher$DefaultDefaultValueProcessorMatcher [WARNING] - net.sf.json.util.PropertyFilter [WARNING] - net.sf.json.JsonConfig [WARNING] - net.sf.json.filters.CompositePropertyFilter [WARNING] - 88 more... [WARNING] dicoogle-sdk-ext.jar, dicoogle-sdk.jar, jspf.core-1.0.2.jar define 295 overlappping classes: [WARNING] - net.xeoh.plugins.base.impl.classpath.loader.AbstractLoader [WARNING] - net.jcores.options.package-info [WARNING] - net.xeoh.plugins.diagnosis.local.impl.DiagnosisImpl [WARNING] - net.xeoh.plugins.base.annotations.PluginImplementation [WARNING] - net.xeoh.plugins.diagnosis.local.options.status.OptionAtomic [WARNING] - net.xeoh.plugins.base.impl.spawning.handler.InjectHandler [WARNING] - net.jcores.cores.CoreFile$6 [WARNING] - org.codehaus.classworlds.uberjar.boot.InitialClassLoader [WARNING] - net.jcores.CommonCore$3 [WARNING] - net.jcores.cores.CoreString$1 [WARNING] - 285 more... [WARNING] dicoogle-sdk-ext.jar, dcm4che-core-2.0.29.jar, dicoogle-sdk.jar define 141 overlappping classes: [WARNING] - org.dcm4che2.io.SAXWriter [WARNING] - org.dcm4che2.util.CloseUtils [WARNING] - org.dcm4che2.data.FilteredDicomObject$Include [WARNING] - org.dcm4che2.data.VR$US [WARNING] - org.dcm4che2.io.DicomInputStream [WARNING] - org.dcm4che2.io.ContentHandlerAdapter$State [WARNING] - org.dcm4che2.data.VR [WARNING] - org.dcm4che2.data.AbstractDicomObject$1 [WARNING] - org.dcm4che2.data.DicomObjects [WARNING] - org.dcm4che2.data.AbstractDicomObject$4 [WARNING] - 131 more... [WARNING] dicoogle-sdk-ext.jar, xml-apis-1.0.b2.jar define 184 overlappping classes: [WARNING] - org.w3c.dom.css.CSSValueList [WARNING] - org.xml.sax.helpers.NamespaceSupport$Context [WARNING] - org.xml.sax.InputSource [WARNING] - org.w3c.dom.html.HTMLLinkElement [WARNING] - org.xml.sax.ext.LexicalHandler [WARNING] - org.w3c.dom.ProcessingInstruction [WARNING] - org.w3c.dom.NamedNodeMap [WARNING] - javax.xml.transform.Source [WARNING] - org.w3c.dom.html.HTMLBodyElement [WARNING] - org.w3c.dom.Entity [WARNING] - 174 more... [WARNING] dicoogle-sdk-ext.jar, commons-beanutils-1.8.0.jar, dicoogle-sdk.jar define 127 overlappping classes: [WARNING] - org.apache.commons.beanutils.ConvertUtilsBean [WARNING] - org.apache.commons.beanutils.converters.SqlTimeConverter [WARNING] - org.apache.commons.beanutils.converters.FloatArrayConverter [WARNING] - org.apache.commons.beanutils.BeanMap$1 [WARNING] - org.apache.commons.beanutils.BeanMap$4 [WARNING] - org.apache.commons.beanutils.converters.LongArrayConverter [WARNING] - org.apache.commons.beanutils.converters.BooleanArrayConverter [WARNING] - org.apache.commons.beanutils.converters.StringConverter [WARNING] - org.apache.commons.beanutils.BeanMap$12 [WARNING] - org.apache.commons.beanutils.BeanPredicate [WARNING] - 117 more... [WARNING] dicoogle-sdk-ext.jar, dicoogle-sdk.jar, jackson-core-2.9.5.jar define 105 overlappping classes: [WARNING] - com.fasterxml.jackson.core.JsonGenerator$Feature [WARNING] - com.fasterxml.jackson.core.util.Separators [WARNING] - com.fasterxml.jackson.core.io.SegmentedStringWriter [WARNING] - com.fasterxml.jackson.core.TreeNode [WARNING] - com.fasterxml.jackson.core.sym.Name [WARNING] - com.fasterxml.jackson.core.util.RequestPayload [WARNING] - com.fasterxml.jackson.core.util.JsonGeneratorDelegate [WARNING] - com.fasterxml.jackson.core.async.NonBlockingInputFeeder [WARNING] - com.fasterxml.jackson.core.JsonFactory [WARNING] - com.fasterxml.jackson.core.util.DefaultPrettyPrinter$Indenter [WARNING] - 95 more... [WARNING] dicoogle-sdk-ext.jar, javax.servlet-3.0.0.v201112011016.jar, dicoogle-sdk.jar define 74 overlappping classes: [WARNING] - javax.servlet.http.Cookie [WARNING] - javax.servlet.ServletContext [WARNING] - javax.servlet.Registration [WARNING] - javax.servlet.http.HttpSessionListener [WARNING] - javax.servlet.http.HttpSessionContext [WARNING] - javax.servlet.FilterChain [WARNING] - javax.servlet.http.HttpServletRequestWrapper [WARNING] - javax.servlet.http.HttpSessionAttributeListener [WARNING] - javax.servlet.http.HttpSessionBindingListener [WARNING] - javax.servlet.annotation.HandlesTypes [WARNING] - 64 more... [WARNING] dicoogle-sdk-ext.jar, stax2-api-3.1.4.jar, dicoogle-sdk.jar define 124 overlappping classes: [WARNING] - org.codehaus.stax2.ri.Stax2ReaderImpl [WARNING] - org.codehaus.stax2.ri.typed.ValueEncoderFactory$TokenEncoder [WARNING] - org.codehaus.stax2.evt.XMLEvent2 [WARNING] - org.codehaus.stax2.ri.typed.ValueDecoderFactory$FloatDecoder [WARNING] - org.codehaus.stax2.ri.typed.ValueEncoderFactory [WARNING] - org.codehaus.stax2.validation.Validatable [WARNING] - org.codehaus.stax2.ri.typed.ValueDecoderFactory$BaseArrayDecoder [WARNING] - org.codehaus.stax2.XMLStreamProperties [WARNING] - org.codehaus.stax2.ri.typed.AsciiValueEncoder [WARNING] - org.codehaus.stax2.osgi.Stax2InputFactoryProvider [WARNING] - 114 more... [WARNING] dicoogle-sdk-ext.jar, dom4j-1.6.1.jar define 190 overlappping classes: [WARNING] - org.dom4j.bean.BeanMetaData [WARNING] - org.dom4j.dom.DOMDocumentFactory [WARNING] - org.dom4j.bean.BeanElement [WARNING] - org.dom4j.VisitorSupport [WARNING] - org.dom4j.DocumentHelper [WARNING] - org.dom4j.tree.DefaultAttribute [WARNING] - org.dom4j.tree.FlyweightProcessingInstruction [WARNING] - org.dom4j.tree.AbstractDocumentType [WARNING] - org.dom4j.rule.Pattern [WARNING] - org.dom4j.rule.pattern.DefaultPattern [WARNING] - 180 more... [WARNING] dicoogle-sdk-ext.jar, jackson-dataformat-xml-2.9.5.jar, dicoogle-sdk.jar define 47 overlappping classes: [WARNING] - com.fasterxml.jackson.dataformat.xml.ser.XmlBeanSerializer [WARNING] - com.fasterxml.jackson.dataformat.xml.XmlAnnotationIntrospector$Pair [WARNING] - com.fasterxml.jackson.dataformat.xml.XmlAnnotationIntrospector [WARNING] - com.fasterxml.jackson.dataformat.xml.util.AnnotationUtil [WARNING] - com.fasterxml.jackson.dataformat.xml.XmlFactory [WARNING] - com.fasterxml.jackson.dataformat.xml.deser.FromXmlParser$1 [WARNING] - com.fasterxml.jackson.dataformat.xml.deser.XmlBeanDeserializerModifier [WARNING] - com.fasterxml.jackson.dataformat.xml.XmlTypeResolverBuilder$1 [WARNING] - com.fasterxml.jackson.dataformat.xml.ser.XmlBeanSerializerBase [WARNING] - com.fasterxml.jackson.dataformat.xml.XmlMapper [WARNING] - 37 more... [WARNING] dicoogle-sdk-ext.jar, dicoogle-sdk.jar, jetty-io-9.0.3.v20130506.jar define 55 overlappping classes: [WARNING] - org.eclipse.jetty.io.AbstractEndPoint$2 [WARNING] - org.eclipse.jetty.io.WriteFlusher$FailedState [WARNING] - org.eclipse.jetty.io.AbstractConnection$State [WARNING] - org.eclipse.jetty.io.NetworkTrafficListener$Empty [WARNING] - org.eclipse.jetty.io.WriterOutputStream [WARNING] - org.eclipse.jetty.io.ByteBufferPool [WARNING] - org.eclipse.jetty.io.WriteFlusher$CompletingState [WARNING] - org.eclipse.jetty.io.ByteArrayEndPoint [WARNING] - org.eclipse.jetty.io.SelectChannelEndPoint [WARNING] - org.eclipse.jetty.io.WriteFlusher$State [WARNING] - 45 more... [WARNING] commons-logging-1.1.1.jar, dicoogle-sdk-ext.jar, dicoogle-sdk.jar define 28 overlappping classes: [WARNING] - org.apache.commons.logging.LogSource [WARNING] - org.apache.commons.logging.impl.ServletContextCleaner [WARNING] - org.apache.commons.logging.Log [WARNING] - org.apache.commons.logging.LogFactory$3 [WARNING] - org.apache.commons.logging.impl.LogFactoryImpl$2 [WARNING] - org.apache.commons.logging.impl.LogKitLogger [WARNING] - org.apache.commons.logging.LogConfigurationException [WARNING] - org.apache.commons.logging.impl.Jdk14Logger [WARNING] - org.apache.commons.logging.impl.WeakHashtable$Referenced [WARNING] - org.apache.commons.logging.impl.WeakHashtable$WeakKey [WARNING] - 18 more... [WARNING] dicoogle-sdk-ext.jar, jetty-util-9.0.3.v20130506.jar, dicoogle-sdk.jar define 184 overlappping classes: [WARNING] - org.eclipse.jetty.util.Fields$Field [WARNING] - org.eclipse.jetty.util.MemoryUtils$1 [WARNING] - org.eclipse.jetty.util.SocketAddressResolver [WARNING] - org.eclipse.jetty.util.Utf8LineParser$1 [WARNING] - org.eclipse.jetty.util.ArrayQueue [WARNING] - org.eclipse.jetty.util.DateCache [WARNING] - org.eclipse.jetty.util.resource.URLResource [WARNING] - org.eclipse.jetty.util.ExecutorCallback [WARNING] - org.eclipse.jetty.util.Scanner$DiscreteListener [WARNING] - org.eclipse.jetty.util.thread.Timeout [WARNING] - 174 more... [WARNING] dicoogle-sdk-ext.jar, dicoogle-sdk.jar, jetty-security-9.0.3.v20130506.jar define 56 overlappping classes: [WARNING] - org.eclipse.jetty.security.MappedLoginService [WARNING] - org.eclipse.jetty.security.PropertyUserStore$2 [WARNING] - org.eclipse.jetty.security.SpnegoUserPrincipal [WARNING] - org.eclipse.jetty.security.authentication.DigestAuthenticator [WARNING] - org.eclipse.jetty.security.UserDataConstraint [WARNING] - org.eclipse.jetty.security.PropertyUserStore$UserListener [WARNING] - org.eclipse.jetty.security.authentication.FormAuthenticator [WARNING] - org.eclipse.jetty.security.UserAuthentication [WARNING] - org.eclipse.jetty.security.MappedLoginService$Anonymous [WARNING] - org.eclipse.jetty.security.DefaultAuthenticatorFactory [WARNING] - 46 more... [WARNING] dicoogle-sdk-ext.jar, commons-collections-3.2.1.jar, dicoogle-sdk.jar define 448 overlappping classes: [WARNING] - org.apache.commons.collections.map.AbstractLinkedMap$LinkMapIterator [WARNING] - org.apache.commons.collections.bidimap.TreeBidiMap$Node [WARNING] - org.apache.commons.collections.comparators.TransformingComparator [WARNING] - org.apache.commons.collections.iterators.AbstractListIteratorDecorator [WARNING] - org.apache.commons.collections.bag.AbstractMapBag$BagIterator [WARNING] - org.apache.commons.collections.map.AbstractReferenceMap$ReferenceKeySetIterator [WARNING] - org.apache.commons.collections.DoubleOrderedMap$3$1 [WARNING] - org.apache.commons.collections.StaticBucketMap [WARNING] - org.apache.commons.collections.ReferenceMap$1 [WARNING] - org.apache.commons.collections.comparators.ComparatorChain [WARNING] - 438 more... [WARNING] dicoogle-sdk-ext.jar, dicoogle-sdk.jar, ezmorph-1.0.6.jar define 46 overlappping classes: [WARNING] - net.sf.ezmorph.array.CharArrayMorpher [WARNING] - net.sf.ezmorph.object.SwitchingMorpher [WARNING] - net.sf.ezmorph.array.ShortArrayMorpher [WARNING] - net.sf.ezmorph.bean.BeanMorpher [WARNING] - net.sf.ezmorph.primitive.AbstractDecimalMorpher [WARNING] - net.sf.ezmorph.array.IntArrayMorpher [WARNING] - net.sf.ezmorph.object.AbstractObjectMorpher [WARNING] - net.sf.ezmorph.primitive.BooleanMorpher [WARNING] - net.sf.ezmorph.primitive.FloatMorpher [WARNING] - net.sf.ezmorph.test.ArrayAssertions [WARNING] - 36 more... [WARNING] dicoogle-sdk-ext.jar, dicoogle-sdk.jar, jetty-server-9.0.3.v20130506.jar define 158 overlappping classes: [WARNING] - org.eclipse.jetty.server.handler.ContextHandler$NoContext [WARNING] - org.eclipse.jetty.server.ServletRequestHttpWrapper [WARNING] - org.eclipse.jetty.server.HttpConnection [WARNING] - org.eclipse.jetty.server.ShutdownMonitor$1 [WARNING] - org.eclipse.jetty.server.UserIdentity$Scope [WARNING] - org.eclipse.jetty.server.Authentication$Wrapped [WARNING] - org.eclipse.jetty.server.AsyncContextState$1 [WARNING] - org.eclipse.jetty.server.handler.ScopedHandler [WARNING] - org.eclipse.jetty.server.SessionIdManager [WARNING] - org.eclipse.jetty.server.Authentication$Failure [WARNING] - 148 more... [WARNING] dicoogle-sdk-ext.jar, dicoogle-sdk.jar, commons-lang3-3.4.jar define 224 overlappping classes: [WARNING] - org.apache.commons.lang3.time.StopWatch$State$1 [WARNING] - org.apache.commons.lang3.builder.MultilineRecursiveToStringStyle [WARNING] - org.apache.commons.lang3.SerializationUtils [WARNING] - org.apache.commons.lang3.time.FastDatePrinter$TwentyFourHourField [WARNING] - org.apache.commons.lang3.LocaleUtils [WARNING] - org.apache.commons.lang3.concurrent.ConcurrentException [WARNING] - org.apache.commons.lang3.CharRange [WARNING] - org.apache.commons.lang3.builder.IDKey [WARNING] - org.apache.commons.lang3.reflect.TypeUtils [WARNING] - org.apache.commons.lang3.ArrayUtils [WARNING] - 214 more... [WARNING] dicoogle-sdk-ext.jar, slf4j-api-1.7.12.jar, dicoogle-sdk.jar define 28 overlappping classes: [WARNING] - org.slf4j.helpers.SubstituteLogger [WARNING] - org.slf4j.helpers.NamedLoggerBase [WARNING] - org.slf4j.helpers.NOPMDCAdapter [WARNING] - org.slf4j.MarkerFactory [WARNING] - org.slf4j.helpers.BasicMarker [WARNING] - org.slf4j.spi.LoggerFactoryBinder [WARNING] - org.slf4j.MDC$MDCCloseable [WARNING] - org.slf4j.spi.LocationAwareLogger [WARNING] - org.slf4j.helpers.MessageFormatter [WARNING] - org.slf4j.helpers.Util$ClassContextSecurityManager [WARNING] - 18 more... [WARNING] dicoogle-sdk-ext.jar, commons-lang-2.5.jar, dicoogle-sdk.jar define 132 overlappping classes: [WARNING] - org.apache.commons.lang.NotImplementedException [WARNING] - org.apache.commons.lang.math.JVMRandom [WARNING] - org.apache.commons.lang.builder.ToStringBuilder [WARNING] - org.apache.commons.lang.time.FastDateFormat$TimeZoneDisplayKey [WARNING] - org.apache.commons.lang.exception.NestableRuntimeException [WARNING] - org.apache.commons.lang.text.StrMatcher$TrimMatcher [WARNING] - org.apache.commons.lang.time.FastDateFormat$CharacterLiteral [WARNING] - org.apache.commons.lang.time.FastDateFormat$TimeZoneNameRule [WARNING] - org.apache.commons.lang.mutable.MutableDouble [WARNING] - org.apache.commons.lang.LocaleUtils [WARNING] - 122 more... [WARNING] dcm4che-net-2.0.29.jar, dicoogle-sdk-ext.jar, dicoogle-sdk.jar define 84 overlappping classes: [WARNING] - org.dcm4che2.net.service.DicomService [WARNING] - org.dcm4che2.net.pdu.UserIdentityRQ [WARNING] - org.dcm4che2.net.State$Sta7 [WARNING] - org.dcm4che2.net.service.VerificationService [WARNING] - org.dcm4che2.net.pdu.CommonExtendedNegotiation [WARNING] - org.dcm4che2.net.service.StorageService [WARNING] - org.dcm4che2.net.pdu.AAssociateRQAC [WARNING] - org.dcm4che2.net.PDUDecoder [WARNING] - org.dcm4che2.net.service.NEventReportSCU [WARNING] - org.dcm4che2.net.TransferCapability [WARNING] - 74 more... [WARNING] jackson-module-jaxb-annotations-2.9.5.jar, dicoogle-sdk-ext.jar, dicoogle-sdk.jar define 12 overlappping classes: [WARNING] - com.fasterxml.jackson.module.jaxb.ser.DomElementJsonSerializer [WARNING] - com.fasterxml.jackson.module.jaxb.deser.DataHandlerJsonDeserializer$1 [WARNING] - com.fasterxml.jackson.module.jaxb.JaxbAnnotationIntrospector [WARNING] - com.fasterxml.jackson.module.jaxb.JaxbAnnotationModule$Priority [WARNING] - com.fasterxml.jackson.module.jaxb.deser.DomElementJsonDeserializer [WARNING] - com.fasterxml.jackson.module.jaxb.JaxbAnnotationModule$1 [WARNING] - com.fasterxml.jackson.module.jaxb.JaxbAnnotationIntrospector$1 [WARNING] - com.fasterxml.jackson.module.jaxb.JaxbAnnotationModule [WARNING] - com.fasterxml.jackson.module.jaxb.deser.DataHandlerJsonDeserializer [WARNING] - com.fasterxml.jackson.module.jaxb.PackageVersion [WARNING] - 2 more... [WARNING] dicoogle-sdk-ext.jar, org.restlet.lib.org.json-2.0.jar, dicoogle-sdk.jar define 18 overlappping classes: [WARNING] - org.json.JSONString [WARNING] - org.json.HTTPTokener [WARNING] - org.json.HTTP [WARNING] - org.json.JSONObject [WARNING] - org.json.JSONStringer [WARNING] - org.json.JSONObject$Null [WARNING] - org.json.CookieList [WARNING] - org.json.Cookie [WARNING] - org.json.JSONTokener [WARNING] - org.json.JSONException [WARNING] - 8 more... [WARNING] dicoogle-sdk-ext.jar, dicoogle-sdk.jar define 78 overlappping classes: [WARNING] - pt.ua.dicoogle.sdk.settings.types.ServerDirectoryPath [WARNING] - pt.ua.dicoogle.sdk.utils.DICOMObject$Path [WARNING] - pt.ua.dicoogle.sdk.core.DicooglePlatformInterface [WARNING] - pt.ua.dicoogle.sdk.settings.server.ServerSettingsReader [WARNING] - pt.ua.dicoogle.sdk.JettyPluginInterface [WARNING] - pt.ua.dicoogle.sdk.task.Task [WARNING] - pt.ua.dicoogle.sdk.settings.CoreSettings [WARNING] - pt.ua.dicoogle.sdk.utils.query.ForEachAdapter [WARNING] - pt.ua.dicoogle.sdk.datastructs.SOPClass [WARNING] - pt.ua.dicoogle.sdk.utils.MappedDICOMObjectDecorator [WARNING] - 68 more... [WARNING] dicoogle-sdk-ext.jar, woodstox-core-5.0.3.jar, dicoogle-sdk.jar define 205 overlappping classes: [WARNING] - com.ctc.wstx.dtd.DTDSchemaFactory [WARNING] - com.ctc.wstx.exc.WstxException [WARNING] - com.ctc.wstx.msv.GenericMsvValidator [WARNING] - com.ctc.wstx.sr.ElemAttrs [WARNING] - com.ctc.wstx.ent.ParsedExtEntity [WARNING] - com.ctc.wstx.io.MergedStream [WARNING] - com.ctc.wstx.dtd.DTDIdRefsAttr [WARNING] - com.ctc.wstx.io.UTF8Writer [WARNING] - com.ctc.wstx.cfg.OutputConfigFlags [WARNING] - com.ctc.wstx.sr.NsDefaultProvider [WARNING] - 195 more... [WARNING] dicoogle-sdk-ext.jar, dicoogle-sdk.jar, org.restlet.ext.json-2.1.2.jar define 2 overlappping classes: [WARNING] - org.restlet.ext.json.JsonRepresentation [WARNING] - org.restlet.ext.json.JsonConverter [WARNING] maven-shade-plugin has detected that some .class files [WARNING] are present in two or more JARs. When this happens, only [WARNING] one single version of the class is copied in the uberjar. [WARNING] Usually this is not harmful and you can skeep these [WARNING] warnings, otherwise try to manually exclude artifacts [WARNING] based on mvn dependency:tree -Ddetail=true and the above [WARNING] output [WARNING] See http://docs.codehaus.org/display/MAVENUSER/Shade+Plugin [INFO] Replacing original artifact with shaded artifact. [INFO] Replacing /root/dicoogle/dicoogle/target/dicoogle.jar with /root/dicoogle/dicoogle/target/dicoogle-3.0.0-SNAPSHOT-shaded.jar [INFO] Dependency-reduced POM written at: /root/dicoogle/dicoogle/dependency-reduced-pom.xml [INFO] [INFO] --- license-maven-plugin:2.4:check (default) @ dicoogle --- [INFO] Checking licenses... [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ dicoogle --- [INFO] Installing /root/dicoogle/dicoogle/target/dicoogle.jar to /root/.m2/repository/pt/ua/ieeta/dicoogle/3.0.0-SNAPSHOT/dicoogle-3.0.0-SNAPSHOT.jar [INFO] Installing /root/dicoogle/dicoogle/dependency-reduced-pom.xml to /root/.m2/repository/pt/ua/ieeta/dicoogle/3.0.0-SNAPSHOT/dicoogle-3.0.0-SNAPSHOT.pom [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for dicoogle-all 3.0.0-SNAPSHOT: [INFO] [INFO] dicoogle-all ....................................... SUCCESS [ 8.221 s] [INFO] dicoogle-sdk ....................................... SUCCESS [01:32 min] [INFO] dicoogle-sdk-ext ................................... SUCCESS [ 3.232 s] [INFO] dicoogle ........................................... SUCCESS [01:16 min] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 03:00 min [INFO] Finished at: 2020-10-12T23:25:09Z [INFO] ------------------------------------------------------------------------ Removing intermediate container 3cc895f62065 ---> 19327b43a56f Step 6/6 : CMD ["java","-jar","dicoogle.jar","-s"] ---> Running in 722251ba711e Removing intermediate container 722251ba711e ---> 003158b4524b Successfully built 003158b4524b Successfully tagged dicoogle:latest`

rewt commented 3 years ago

I'm getting same error when cloning repo from scratch and running on Ubuntu with following details:

Distributor ID: Ubuntu Description: Ubuntu 18.04.4 LTS Release: 18.04 Codename: bionic

openjdk 13 2019-09-17 OpenJDK Runtime Environment (build 13+33) OpenJDK 64-Bit Server VM (build 13+33, mixed mode, sharing)

Apache Maven 3.6.0 Maven home: /usr/share/maven Java version: 13, vendor: Oracle Corporation, runtime: /opt/jdk-13 Default locale: en, platform encoding: UTF-8 OS name: "linux", version: "5.3.0-1019-aws", arch: "amd64", family: "unix"

npm Version 6.14.6

node Version v10.22.1

rewt commented 3 years ago

ahh, need to execute steps outlined here and then run java -jar dicoogle.jar -s

https://bioinformatics-ua.github.io/dicoogle-learning-pack/docs/building/#building-and-debugging-the-web-application