brownie interprets input parameter `readCorrection` as input file

[sean-la]

When I perform the following command:

./brownie readCorrection -t 18 -k ${kmer} -o ${outputDir}/illumina_corrected.fastq -p ${outputDir} ${short}

I get the following output:

Brownie: don't know how to open file: 'readCorrection'
Expected one of the following extensions: .fastq, .fasta, .sam, .raw (or .gz variants thereof)

Thanks in advance!

[gmiclotte]

Hello,

thanks for reporting this issue, there was a bug in the settings parsing, this should be resolved with commit f2f2ddb.

Kind regards, Giles Miclotte

[sean-la]

That worked, thanks!