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biointec / browniecorrector

Correction of Illumina reads
GNU Affero General Public License v3.0
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Help with Error Message #3

Open christopher-hardy opened 3 years ago

christopher-hardy commented 3 years ago

Hi,

Thank you for developing BrownieCorrector- I am grateful that you are addressing the issue of poly-nucleotide stretches in Illumina data and am excited to try the software.

When I tried a quick test sample with a known Poly-C issue the software errors out. I've attached the standard out/error files and pasted the command below. Please let me know if there are any hints in the output on the best way to proceed.

brownie.stderr.txt brownie.stdout.txt

./browniecorrector/bashScripts/runPipeLine.sh D11-interleaved-ds.fastq.gz 836 ./brownie-test

Have a great day,

Chris

b-math commented 2 years ago

Hello Christopher,

did you manage to solve the issue? I'm experiencing the same problem as you did.

Best regards, Barbara