bugfix/remove-dask-upper-bound

bioio-devs / bioio-bioformats

A BioIO reader plugin for reading bioformats formatted images.

GNU General Public License v3.0

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bugfix/remove-dask-upper-bound #15

Open evamaxfield opened 3 months ago

evamaxfield commented 3 months ago

Link to Relevant Issue

This pull request resolves #14

Description of Changes

The issue isn't that numpy has an error its that dask is bounded. At least, bioio tests complete just fine using the latest version.

I don't have access to the test files anymore so opening this PR to have tests run things for me.

Only other change is I added uv to the CI job to make installing dependencies much much much faster.

evamaxfield commented 3 months ago

Seems like all of the tests are passing except for the other bug: #10

Happy to remove the uv stuff if you want. For some reason I thought these were heavier dependencies -- normal pip seems to have ~20 second dependency install vs ~10 second installs with uvso just let me know but seems like we just had a bad upper bound on dask