Closed pwrose closed 7 years ago
The classes that use Jmol were renamed to contain Jmol in its name, so this class is now called MultipleAlignmentJmolDisplay. I will update the example and also fix the type with algorithm/multiple.
I would recommend that you use the DemoMultipleMC classes inside the demo package in both the biojava-structure and the biojava-structure-gui modules, since they are up to day and should work without errors.
Thank you for reporting the errors in the example.
The toFASTA
method was throwing a NullPointer
because the StructureIdentifiers
were not set in the example, so the headers of the FASTA alignment format were null. It is fixed now.
--> should this line read: MultipleAlignment result = multiple.align(atomArrays);
--> after fixing the previous statement, the toFASTA method throws an exception.