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biojava / biojava-tutorial

:book::books:An introductory tutorial for BioJava
http://www.biojava.org
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ProtParam integration #29

Closed Baytars closed 3 years ago

Baytars commented 3 years ago

It is possible to get sequence from UniProt but I don't seem to be able to find a way to predict physical and chemical properties of protein from protein sequence with BioJava. The online service for that is ProtParam but it provides with html output only, which is not convenient for Java developers: https://web.expasy.org/protparam/ BioPython has a programmatic way for that, see https://biopython.org/wiki/ProtParam And I found a Java implementation for that on SourceForge but it may be too old and discontinued: http://strbio.sourceforge.net/javadocs/org/strbio/net/ProtParam.html Most importantly, it is not on Maven Repository. So, any latest Java counterpart for that?

Baytars commented 3 years ago

Sorry that I have posted on the wrong repo