Additional info (worksheets, data, screenshots, ...)
Traceback (most recent call last):
File "/Users/ajda/orange/orange-bio/orangecontrib/bio/widgets3/OWKEGGPathwayBrowser.py", line 713, in _onEnrichTaskFinished
self._enrichTask.result()
File "/Users/ajda/orange/orange3/Orange/widgets/utils/concurrent.py", line 317, in result
return self._future.result(timeout)
File "/Users/ajda/anaconda/envs/o3/lib/python3.5/concurrent/futures/_base.py", line 398, in result
return self.get_result()
File "/Users/ajda/anaconda/envs/o3/lib/python3.5/concurrent/futures/_base.py", line 357, in get_result
raise self._exception
File "/Users/ajda/orange/orange3/Orange/widgets/utils/concurrent.py", line 327, in _execute
result = self.run()
File "/Users/ajda/orange/orange3/Orange/widgets/utils/concurrent.py", line 308, in run
return self.function()
File "/Users/ajda/orange/orange-bio/orangecontrib/bio/widgets3/OWKEGGPathwayBrowser.py", line 703, in
run_enrichment(org_code, genes, reference, progress)
File "/Users/ajda/orange/orange-bio/orangecontrib/bio/widgets3/OWKEGGPathwayBrowser.py", line 691, in run_enrichment
pathways.keys(), progress_callback=progress
File "/Users/ajda/orange/orange-bio/orangecontrib/bio/kegg/databases.py", line 239, in pre_cache
self.api.get(batch)
File "/Users/ajda/orange/orange-bio/orangecontrib/bio/kegg/caching.py", line 184, in call
rval = self.function(self.instance, *args)
File "/Users/ajda/orange/orange-bio/orangecontrib/bio/kegg/api.py", line 394, in get
return self._batch_get(ids)
File "/Users/ajda/orange/orange-bio/orangecontrib/bio/kegg/api.py", line 447, in _batch_get
entries = [store[key].value for key in keys]
File "/Users/ajda/orange/orange-bio/orangecontrib/bio/kegg/api.py", line 447, in
entries = [store[key].value for key in keys]
File "/Users/ajda/orange/orange-bio/orangecontrib/bio/kegg/caching.py", line 63, in getitem
raise KeyError(key)
KeyError: "get('path:hsa00300',)"
jerneju
commented
7 years ago
Orange version
3.4.6-dev
Orange-Bioinformatics version
2.6.21
Expected behavior
KEGG Pathways widget works.
Actual behavior
KEGG is broken and doesn't work.
Steps to reproduce the behavior
Geo Datasets (G1210) - KEGG.
Additional info (worksheets, data, screenshots, ...)
Traceback (most recent call last): File "/Users/ajda/orange/orange-bio/orangecontrib/bio/widgets3/OWKEGGPathwayBrowser.py", line 713, in _onEnrichTaskFinished self._enrichTask.result() File "/Users/ajda/orange/orange3/Orange/widgets/utils/concurrent.py", line 317, in result return self._future.result(timeout) File "/Users/ajda/anaconda/envs/o3/lib/python3.5/concurrent/futures/_base.py", line 398, in result return self.get_result() File "/Users/ajda/anaconda/envs/o3/lib/python3.5/concurrent/futures/_base.py", line 357, in get_result raise self._exception File "/Users/ajda/orange/orange3/Orange/widgets/utils/concurrent.py", line 327, in _execute result = self.run() File "/Users/ajda/orange/orange3/Orange/widgets/utils/concurrent.py", line 308, in run return self.function() File "/Users/ajda/orange/orange-bio/orangecontrib/bio/widgets3/OWKEGGPathwayBrowser.py", line 703, in
run_enrichment(org_code, genes, reference, progress)
File "/Users/ajda/orange/orange-bio/orangecontrib/bio/widgets3/OWKEGGPathwayBrowser.py", line 691, in run_enrichment
pathways.keys(), progress_callback=progress
File "/Users/ajda/orange/orange-bio/orangecontrib/bio/kegg/databases.py", line 239, in pre_cache
self.api.get(batch)
File "/Users/ajda/orange/orange-bio/orangecontrib/bio/kegg/caching.py", line 184, in call
rval = self.function(self.instance, *args)
File "/Users/ajda/orange/orange-bio/orangecontrib/bio/kegg/api.py", line 394, in get
return self._batch_get(ids)
File "/Users/ajda/orange/orange-bio/orangecontrib/bio/kegg/api.py", line 447, in _batch_get
entries = [store[key].value for key in keys]
File "/Users/ajda/orange/orange-bio/orangecontrib/bio/kegg/api.py", line 447, in
entries = [store[key].value for key in keys]
File "/Users/ajda/orange/orange-bio/orangecontrib/bio/kegg/caching.py", line 63, in getitem
raise KeyError(key)
KeyError: "get('path:hsa00300',)"