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KEGG host connection problems #118

Open Garoutte opened 7 years ago

Garoutte commented 7 years ago
Hello I'm trying to run the tutorial for Orange-Bioinformatics. Specifically the GSEA tutorial. I can't get it to run properly. When I us this command: ```py genesets = geneset.collections((("KEGG",), "Homo sapiens")) ``` I get many error messages that boil down to: ``` "requests.exceptions.ConnectionError: HTTPConnectionPool(host='asterix.fri.uni-lj.si', port=80): Max retries exceeded with url: /orngServerFiles/public/info (Caused by NewConnectionError(': Failed to establish a new connection: [Errno 8] nodename nor servname provided, or not known',))" ``` It seems that host='asterix.fri.uni-lj.si' doesn't exist. I was wondering if you could provide me with an updated link or point me in the right direct? Thank you for your time Aaron ##### Orange version
Orange-Bioinformatics version
Expected behavior
Actual behavior
Steps to reproduce the behavior
Additional info (worksheets, data, screenshots, ...)
markotoplak commented 7 years ago

Thanks for the report. Which version of Orange and Orange-bioinformatics are you using?

A while ago we moved data to a new server, but we might have mistakenly left out some parts.

markotoplak commented 6 years ago

It seems you are running some old version. The code was changed to use a new server a year ago: on Oct 21 2016. Please install a recent version of Orange3 and a recent version ob Orange Bioinformatics.

But even if you use the updated version, I am afraid that the documentation is sometimes not up to date. Which tutorial are you following?

Garoutte commented 6 years ago

I'm following this tutorial: http://orange-bioinformatics.readthedocs.io/en/latest/reference/gsea.html

On Thu, Oct 26, 2017 at 5:49 AM, Marko Toplak notifications@github.com wrote:

It seems you are running some old version. The code was changed to use a new server a year ago: on Oct 21 2016. Please install a recent version of Orange3 and a recent version ob Orange Bioinformatics.

But even if you use the updated version, I am afraid that the documentation is sometimes not up to date. Which tutorial are you following?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/biolab/orange-bio/issues/118#issuecomment-339613374, or mute the thread https://github.com/notifications/unsubscribe-auth/ABEaVS6lnA_yUB4CQbTB8_4d8GVF_I_tks5swFXAgaJpZM4QGDM- .