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biolab / orange3-bioinformatics

🍊🔬 Bioinformatics add-on for Orange3
GNU General Public License v3.0
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Sort does not work within Gene Enrichment Widget #331

Open DLWheeler opened 1 year ago

DLWheeler commented 1 year ago

Describe the bug The table generated by the Gene Enrichment Widget cannot be sorted. The sorting indicators respond to mouse clicks but no sorting occurs.

To Reproduce

Provide the widget a list of gene ids, e.g. a few for Schizosaccharomyces pombe:

SPAC750.01 SPBPB21E7.04c SPBPB21E7.01c SPCC663.06c SPAC869.07c SPAC869.09 SPAC3G9.11c SPCC663.08c SPAC29A4.12c SPBC609.04

Adjust Count to 2 and Pval to 0.2 to get enriched terms. The output table cannot be sorted.

Expected behavior I expect the table to be sortable on any field.

Error message From Orange Log

2023-03-26 11:42:13,945:ERROR:resdk: Traceback (most recent call last): File "/Applications/Orange3.app/Contents/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/orangecontrib/bioinformatics/widgets/utils/gui/init.py", line 69, in sort return self.sourceModel().sort(*args, **kwargs) AttributeError: 'NoneType' object has no attribute 'sort'

Desktop (please complete the following information):

Additional context Add any other context about the problem here.

JakaKokosar commented 1 year ago

@DLWheeler, thanks for reporting this. I will look at it first thing tomorrow.