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biolab / orange3-single-cell

🍊🔬 Orange add-on for gene expression of single cell data
https://singlecell.biolab.si/
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Issues loading data from Excel in scOrange on a Mac OS #365

Closed YuriB85 closed 4 years ago

YuriB85 commented 5 years ago

I am OSX 10.14.6 user and I am having difficulties opening Excel files in scOrange (v. 1.3.0).

I have tried multiple Excel files and even following the YouTube video "Single Cell Orange 03: Loading Single Cell Data from Tab-Delimited Files" I downloaded the file Dicty.xlsx from the source linked in YouTube, but it does not open. I've tried also OSX 10.13.6 and the same issue occurs. On the other hand, It works perfectly on a Win10 PC.

JakaKokosar commented 5 years ago

Hi, I'm also running osx 10.14.6 and I have no trouble following the example in the tutorial video.

Screenshot 2019-09-12 at 22 33 52

Can you provide more details so we can try to reproduce this unexpected behaviour? What is the error message you get when you load the data? How did you install scOrange? Was it through pip, conda or did you use the installer from the website?

YuriB85 commented 5 years ago

This is what I get if I try following the example in the tutorial:

Screenshot 2019-09-14 at 4 04 54 PM

I downloaded the scOrange installer from the website.

Thanks.

JakaKokosar commented 5 years ago

@VesnaT Can you maybe look at this when you have the time?

VesnaT commented 4 years ago

I'm looking at it, but can't reproduce it. @YuriB85 Could you please attach the file, you get the error with?

JakaKokosar commented 4 years ago

Installer ships with a version of xlrd (1.0.0) which does not support python 37. This is supported as of version 1.2.0.

@YuriB85 Thank you for reporting this. I will update the installer and let you know when its done.